Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99510 * 2 1 4 4 H 1.48504 * 109.46807 * 269.99517 * 3 2 1 5 5 H 1.48493 * 109.47168 * 29.99466 * 3 2 1 6 6 H 1.48500 * 109.47069 * 150.00026 * 3 2 1 7 7 C 1.37872 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99974 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00491 * 180.02562 * 7 2 1 10 10 C 1.50695 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.29524 * 119.81981 * 95.00390 * 10 9 7 12 12 C 1.51374 * 120.35983 * 180.02562 * 11 10 9 13 13 C 1.53034 * 108.76147 * 287.98647 * 12 11 10 14 14 C 1.52105 * 110.63054 * 85.53858 * 13 12 11 15 15 C 1.51852 * 113.79578 * 293.72327 * 14 13 12 16 16 C 1.51372 * 119.81967 * 275.02154 * 10 9 7 17 17 H 0.96996 * 120.00380 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47096 * 59.99906 * 9 7 2 19 19 H 1.09002 * 109.47140 * 300.00400 * 9 7 2 20 20 H 1.08002 * 119.82307 * 0.02562 * 11 10 9 21 21 H 1.09002 * 109.61505 * 47.81365 * 12 11 10 22 22 H 1.09004 * 109.61368 * 168.16138 * 12 11 10 23 23 H 1.08992 * 109.22153 * 206.15156 * 13 12 11 24 24 H 1.09005 * 109.22088 * 325.49706 * 13 12 11 25 25 H 1.08995 * 108.61101 * 172.57446 * 14 13 12 26 26 H 1.09001 * 108.52813 * 54.81109 * 14 13 12 27 27 H 1.09000 * 109.21929 * 306.14989 * 15 14 13 28 28 H 1.08993 * 109.18983 * 186.77415 * 15 14 13 29 29 H 1.09001 * 109.61180 * 11.61663 * 16 10 9 30 30 H 1.09002 * 109.60990 * 131.96054 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.3216 -3.1890 -1.1185 12 6 4.8268 -4.6158 -1.1329 13 6 6.2500 -4.6397 -0.5707 14 6 6.2251 -4.7354 0.9471 15 6 5.6460 -3.5085 1.6290 16 6 4.1561 -3.3629 1.3091 17 1 -0.4850 0.8400 -0.0004 18 1 3.8746 -0.6799 0.8911 19 1 3.8753 -0.6802 -0.8888 20 1 4.2170 -2.6469 -2.0467 21 1 4.1794 -5.2395 -0.5164 22 1 4.8312 -4.9921 -2.1559 23 1 6.7835 -5.4971 -0.9809 24 1 6.7659 -3.7244 -0.8611 25 1 7.2447 -4.8833 1.3031 26 1 5.6308 -5.6044 1.2297 27 1 6.1759 -2.6214 1.2820 28 1 5.7737 -3.6040 2.7072 29 1 3.6638 -2.8045 2.1054 30 1 3.7002 -4.3489 1.2180 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260192271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -33.356254 kcal Electronic energy + Delta-G solvation = -10801.790566 eV Core-core repulsion = 8981.269743 eV Total energy + Delta-G solvation = -1820.520823 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60444 -35.57870 -33.86033 -32.69107 -30.14236 -26.18463 -25.01212 -23.20648 -21.11896 -18.95320 -18.38356 -16.76323 -16.10037 -16.04131 -14.84261 -14.50630 -14.27805 -14.17755 -13.84210 -13.50430 -13.05408 -12.65419 -12.43164 -12.03979 -11.87079 -11.70862 -11.44295 -11.39230 -11.30975 -10.94746 -10.79642 -9.37378 -8.31711 -6.35805 1.32875 1.34576 1.47105 1.63398 2.33316 3.02360 3.85724 4.07470 4.09739 4.31182 4.39161 4.41959 4.65102 4.75039 4.87743 4.99507 5.03446 5.10888 5.15044 5.28789 5.32083 5.34896 5.41270 5.42266 5.58150 5.59818 5.95833 6.28470 6.40281 6.71292 7.27785 8.85031 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.064742 B = 0.010740 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.383766 B = 2606.479333 C = 2676.967935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.518 4.518 8 H 0.028 0.972 9 C 0.017 3.983 10 C -0.102 4.102 11 C -0.193 4.193 12 C -0.080 4.080 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.079 4.079 17 H 0.267 0.733 18 H 0.023 0.977 19 H 0.017 0.983 20 H 0.088 0.912 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.925 -7.128 1.052 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.556 4.556 8 H 0.046 0.954 9 C -0.020 4.020 10 C -0.102 4.102 11 C -0.211 4.211 12 C -0.117 4.117 13 C -0.146 4.146 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.116 4.116 17 H 0.076 0.924 18 H 0.041 0.959 19 H 0.035 0.965 20 H 0.106 0.894 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.789 -7.028 1.061 15.513 hybrid contribution -0.615 1.013 -0.168 1.197 sum 13.174 -6.015 0.893 14.510 Atomic orbital electron populations 1.70058 1.08222 1.28206 1.52594 1.26014 0.95656 1.03429 0.94125 0.85643 0.79465 0.78240 0.79246 1.19174 1.20550 1.17194 1.21221 0.91161 0.92924 1.50325 0.95387 1.18704 0.94128 0.92745 0.96397 1.21450 0.96464 0.96240 0.96064 1.22346 1.04191 0.98038 0.96551 1.20737 0.96893 0.92655 1.01404 1.21320 0.95424 1.02221 0.95667 1.21184 1.01508 0.97410 0.95068 1.21257 0.93536 0.98968 1.00690 1.20741 0.97664 0.98940 0.94267 0.92395 0.95921 0.96488 0.89424 0.91928 0.90976 0.89895 0.92735 0.90581 0.91882 0.92853 0.90602 0.93253 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.98 13.96 21.45 0.30 -60.69 16 2 C 0.00 0.26 5.47 84.65 0.46 0.73 16 3 Si 0.95 45.48 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.45 16 7 C -0.52 -31.19 9.65 25.60 0.25 -30.95 16 8 H 0.03 1.87 7.98 -2.91 -0.02 1.84 16 9 C 0.02 0.87 4.12 29.10 0.12 0.99 16 10 C -0.10 -4.31 4.35 -14.76 -0.06 -4.38 16 11 C -0.19 -7.34 8.93 27.37 0.24 -7.10 16 12 C -0.08 -2.29 5.60 30.07 0.17 -2.12 16 13 C -0.11 -2.55 5.70 30.31 0.17 -2.38 16 14 C -0.11 -2.56 5.29 29.92 0.16 -2.40 16 15 C -0.11 -2.94 5.67 30.24 0.17 -2.77 16 16 C -0.08 -2.83 5.47 30.09 0.16 -2.67 16 17 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 18 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 19 H 0.02 0.83 7.38 -2.39 -0.02 0.81 16 20 H 0.09 3.49 7.95 -2.91 -0.02 3.47 16 21 H 0.06 1.82 6.69 -2.39 -0.02 1.81 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.36 7.86 -2.38 -0.02 1.34 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.34 7.90 -2.39 -0.02 1.32 16 27 H 0.05 1.55 7.86 -2.39 -0.02 1.53 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 30 H 0.07 2.34 6.70 -2.39 -0.02 2.32 16 Total: -1.00 -66.66 238.86 5.06 -61.60 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.03 Total: 4.76 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 1.85 Total: -53.04 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.30 Total: -60.69 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -66.66 5.06 -61.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260192271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.242 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds