Wall clock time and date at job start Mon Mar 30 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48498 * 109.47061 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.47246 * 29.99780 * 3 2 1 6 6 H 1.48497 * 109.46920 * 149.99886 * 3 2 1 7 7 C 1.37875 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99691 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.32324 * 57.93938 * 9 7 2 11 11 C 1.53436 * 110.66179 * 296.38932 * 9 7 2 12 12 C 1.53672 * 105.99307 * 212.33219 * 11 9 7 13 13 C 1.53217 * 107.21528 * 18.82168 * 12 11 9 14 14 H 1.08999 * 110.42998 * 237.51161 * 13 12 11 15 15 C 1.53533 * 111.06443 * 114.63776 * 13 12 11 16 16 C 1.54261 * 106.52547 * 239.84137 * 15 13 12 17 17 C 1.54753 * 104.14360 * 25.32424 * 16 15 13 18 18 C 1.53987 * 110.27882 * 180.02562 * 9 7 2 19 19 H 1.09002 * 112.36903 * 269.67175 * 18 9 7 20 20 H 0.96998 * 120.00763 * 0.02562 * 1 2 3 21 21 H 1.08991 * 110.40953 * 93.03039 * 11 9 7 22 22 H 1.09005 * 109.87175 * 331.34392 * 11 9 7 23 23 H 1.09001 * 109.89465 * 259.42226 * 12 11 9 24 24 H 1.08997 * 110.03262 * 138.30028 * 12 11 9 25 25 H 1.09001 * 110.04930 * 359.11175 * 15 13 12 26 26 H 1.09007 * 110.04118 * 120.52651 * 15 13 12 27 27 H 1.08998 * 110.49841 * 143.98522 * 16 15 13 28 28 H 1.08997 * 110.49810 * 266.52555 * 16 15 13 29 29 H 1.08999 * 110.65668 * 204.04183 * 17 16 15 30 30 H 1.09008 * 110.65315 * 80.94633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5917 -2.5555 -0.8665 11 6 0.4283 -2.6492 1.2858 12 6 0.3998 -4.1538 1.5970 13 6 1.5502 -4.7999 0.8181 14 1 1.1716 -5.5796 0.1572 15 6 2.6090 -5.3723 1.7713 16 6 3.9305 -4.6458 1.4464 17 6 3.4803 -3.2974 0.8350 18 6 2.2352 -3.6835 -0.0005 19 1 2.4959 -4.0062 -1.0085 20 1 -0.4851 0.8400 -0.0004 21 1 -0.5850 -2.2774 1.1344 22 1 0.9099 -2.1062 2.0992 23 1 -0.5506 -4.5808 1.2769 24 1 0.5380 -4.3167 2.6658 25 1 2.3225 -5.1822 2.8056 26 1 2.7204 -6.4440 1.6057 27 1 4.5077 -4.4787 2.3558 28 1 4.5136 -5.2185 0.7252 29 1 4.2607 -2.8858 0.1950 30 1 3.2122 -2.5898 1.6197 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:56 Heat of formation + Delta-G solvation = -32.318672 kcal Electronic energy + Delta-G solvation = -11270.943690 eV Core-core repulsion = 9450.467860 eV Total energy + Delta-G solvation = -1820.475830 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82103 -33.44661 -31.75024 -29.72706 -26.31948 -25.49262 -23.28962 -20.06822 -19.08841 -17.87828 -15.83380 -15.47351 -14.59348 -13.70843 -13.35912 -13.19862 -12.54177 -11.80734 -11.32396 -10.99028 -10.80435 -10.67384 -10.45681 -10.19383 -10.08507 -9.85200 -9.63940 -9.40929 -9.29357 -8.91481 -8.53404 -8.26098 -5.92334 -3.93245 3.34684 3.41554 3.44417 4.50470 5.27920 5.33098 5.38562 5.45718 5.97940 6.13378 6.14816 6.23456 6.28884 6.41117 6.44134 6.64775 6.66466 6.77026 6.83568 6.99694 7.10921 7.15193 7.37582 7.41095 7.55409 7.82693 8.02618 8.12580 8.57197 9.09955 9.69930 11.17801 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.057477 B = 0.014552 C = 0.012510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.034180 B = 1923.659292 C = 2237.734132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.053 3.947 10 H 0.023 0.977 11 C -0.094 4.094 12 C -0.119 4.119 13 C -0.094 4.094 14 H 0.054 0.946 15 C -0.114 4.114 16 C -0.131 4.131 17 C -0.098 4.098 18 C -0.086 4.086 19 H 0.057 0.943 20 H 0.257 0.743 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -7.061 2.611 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.034 3.966 10 H 0.041 0.959 11 C -0.133 4.133 12 C -0.157 4.157 13 C -0.113 4.113 14 H 0.073 0.927 15 C -0.151 4.151 16 C -0.168 4.168 17 C -0.136 4.136 18 C -0.104 4.104 19 H 0.076 0.924 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.552 -6.938 2.623 8.224 hybrid contribution 0.362 0.933 -0.004 1.001 sum 3.914 -6.005 2.620 7.632 Atomic orbital electron populations 1.69976 1.05872 1.26183 1.51084 1.25002 0.94780 0.98904 0.95473 0.86702 0.79943 0.84023 0.77971 1.20870 1.21437 1.19964 1.21294 0.93065 0.90303 1.49910 0.92064 1.19141 0.92153 0.91445 0.93839 0.95908 1.21892 1.00856 0.90816 0.99687 1.22154 0.96569 0.98949 0.98009 1.22000 0.95461 0.97346 0.96463 0.92707 1.22202 0.95562 0.98193 0.99166 1.22452 0.96593 0.98154 0.99629 1.22425 0.96830 0.94956 0.99352 1.22488 0.96241 0.95565 0.96117 0.92438 0.93282 0.92481 0.93493 0.93784 0.93544 0.92369 0.93338 0.92921 0.92894 0.92931 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 12.37 55.43 0.69 -25.37 16 2 C 0.06 1.66 5.34 -17.82 -0.10 1.57 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.85 7.33 -34.44 -0.25 -14.10 16 8 H 0.06 1.63 6.04 -52.49 -0.32 1.32 16 9 C 0.05 1.33 2.54 -91.03 -0.23 1.10 16 10 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.09 -2.25 5.28 -26.16 -0.14 -2.39 16 12 C -0.12 -2.34 6.45 -26.27 -0.17 -2.51 16 13 C -0.09 -1.76 3.56 -89.47 -0.32 -2.07 16 14 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.11 -1.85 6.45 -25.80 -0.17 -2.01 16 16 C -0.13 -2.14 6.84 -25.15 -0.17 -2.31 16 17 C -0.10 -1.95 4.67 -24.84 -0.12 -2.06 16 18 C -0.09 -1.81 3.64 -88.37 -0.32 -2.13 16 19 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.06 1.47 7.79 -51.93 -0.40 1.06 16 22 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.84 7.13 -51.93 -0.37 0.47 16 25 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.03 7.73 -51.93 -0.40 0.63 16 30 H 0.08 1.70 7.01 -51.92 -0.36 1.34 16 LS Contribution 231.38 15.07 3.49 3.49 Total: -1.00 -28.03 231.38 -7.56 -35.59 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.73 Total: -3.26 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -1.98 Total: -26.94 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.69 Total: -25.37 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.03 -7.56 -35.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.270 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds