Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48498 * 109.47061 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.47246 * 29.99780 * 3 2 1 6 6 H 1.48497 * 109.46920 * 149.99886 * 3 2 1 7 7 C 1.37875 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99691 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.32324 * 57.93938 * 9 7 2 11 11 C 1.53436 * 110.66179 * 296.38932 * 9 7 2 12 12 C 1.53672 * 105.99307 * 212.33219 * 11 9 7 13 13 C 1.53217 * 107.21528 * 18.82168 * 12 11 9 14 14 H 1.08999 * 110.42998 * 237.51161 * 13 12 11 15 15 C 1.53533 * 111.06443 * 114.63776 * 13 12 11 16 16 C 1.54261 * 106.52547 * 239.84137 * 15 13 12 17 17 C 1.54753 * 104.14360 * 25.32424 * 16 15 13 18 18 C 1.53987 * 110.27882 * 180.02562 * 9 7 2 19 19 H 1.09002 * 112.36903 * 269.67175 * 18 9 7 20 20 H 0.96998 * 120.00763 * 0.02562 * 1 2 3 21 21 H 1.08991 * 110.40953 * 93.03039 * 11 9 7 22 22 H 1.09005 * 109.87175 * 331.34392 * 11 9 7 23 23 H 1.09001 * 109.89465 * 259.42226 * 12 11 9 24 24 H 1.08997 * 110.03262 * 138.30028 * 12 11 9 25 25 H 1.09001 * 110.04930 * 359.11175 * 15 13 12 26 26 H 1.09007 * 110.04118 * 120.52651 * 15 13 12 27 27 H 1.08998 * 110.49841 * 143.98522 * 16 15 13 28 28 H 1.08997 * 110.49810 * 266.52555 * 16 15 13 29 29 H 1.08999 * 110.65668 * 204.04183 * 17 16 15 30 30 H 1.09008 * 110.65315 * 80.94633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5917 -2.5555 -0.8665 11 6 0.4283 -2.6492 1.2858 12 6 0.3998 -4.1538 1.5970 13 6 1.5502 -4.7999 0.8181 14 1 1.1716 -5.5796 0.1572 15 6 2.6090 -5.3723 1.7713 16 6 3.9305 -4.6458 1.4464 17 6 3.4803 -3.2974 0.8350 18 6 2.2352 -3.6835 -0.0005 19 1 2.4959 -4.0062 -1.0085 20 1 -0.4851 0.8400 -0.0004 21 1 -0.5850 -2.2774 1.1344 22 1 0.9099 -2.1062 2.0992 23 1 -0.5506 -4.5808 1.2769 24 1 0.5380 -4.3167 2.6658 25 1 2.3225 -5.1822 2.8056 26 1 2.7204 -6.4440 1.6057 27 1 4.5077 -4.4787 2.3558 28 1 4.5136 -5.2185 0.7252 29 1 4.2607 -2.8858 0.1950 30 1 3.2122 -2.5898 1.6197 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = -47.160496 kcal Electronic energy + Delta-G solvation = -11271.587280 eV Core-core repulsion = 9450.467860 eV Total energy + Delta-G solvation = -1821.119420 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44709 -35.32144 -33.55698 -31.47430 -27.94888 -27.31895 -25.16220 -21.51990 -20.95052 -19.50248 -17.86880 -17.10756 -16.54716 -15.27060 -15.06700 -14.74352 -14.32068 -13.56587 -13.15020 -12.90334 -12.71335 -12.40615 -12.12860 -11.77700 -11.57889 -11.46737 -11.28685 -11.05299 -10.96977 -10.78086 -10.57180 -10.37797 -8.07789 -6.14915 1.40473 1.41052 1.51110 2.45244 3.23434 3.80865 3.91283 3.96521 4.53547 4.58646 4.61345 4.73187 4.87879 4.96176 4.99707 5.04795 5.19257 5.24502 5.27704 5.33276 5.46459 5.55107 5.59879 5.68663 5.74309 5.79892 6.01302 6.05895 6.46453 6.96900 7.51596 9.02060 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.057477 B = 0.014552 C = 0.012510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.034180 B = 1923.659292 C = 2237.734132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.043 3.957 10 H -0.017 1.017 11 C -0.086 4.086 12 C -0.113 4.113 13 C -0.092 4.092 14 H 0.070 0.930 15 C -0.109 4.109 16 C -0.121 4.121 17 C -0.098 4.098 18 C -0.088 4.088 19 H 0.059 0.941 20 H 0.257 0.743 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -8.462 3.304 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.024 3.976 10 H 0.001 0.999 11 C -0.125 4.125 12 C -0.150 4.150 13 C -0.110 4.110 14 H 0.089 0.911 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.136 4.136 18 C -0.107 4.107 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.036 -8.350 3.317 10.300 hybrid contribution -0.124 1.390 -0.262 1.420 sum 4.912 -6.960 3.056 9.050 Atomic orbital electron populations 1.70120 1.07350 1.26832 1.52357 1.25807 0.95593 1.02446 0.95447 0.85686 0.78899 0.79801 0.78090 1.20367 1.21324 1.18954 1.21673 0.93393 0.91475 1.48984 0.91802 1.19167 0.92731 0.92906 0.92767 0.99854 1.21681 0.98398 0.94031 0.98347 1.22098 0.97940 0.95393 0.99589 1.21997 0.95535 0.96686 0.96792 0.91104 1.22186 0.94109 0.99719 0.98606 1.22399 0.97171 0.95734 1.00571 1.22320 0.96093 0.96763 0.98430 1.22457 0.96160 0.94843 0.97201 0.92245 0.93451 0.95566 0.95472 0.92746 0.91530 0.91793 0.90388 0.91227 0.91038 0.93337 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 12.37 21.45 0.27 -55.65 16 2 C 0.00 0.26 5.34 84.65 0.45 0.71 16 3 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.52 -28.86 7.33 25.60 0.19 -28.67 16 8 H 0.06 3.45 6.04 -2.91 -0.02 3.43 16 9 C 0.04 2.22 2.54 -11.06 -0.03 2.19 16 10 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 11 C -0.09 -4.23 5.28 30.97 0.16 -4.06 16 12 C -0.11 -4.26 6.45 30.89 0.20 -4.07 16 13 C -0.09 -3.18 3.56 -10.05 -0.04 -3.21 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.11 -3.06 6.45 31.20 0.20 -2.86 16 16 C -0.12 -3.51 6.84 31.62 0.22 -3.29 16 17 C -0.10 -3.77 4.67 31.82 0.15 -3.62 16 18 C -0.09 -3.66 3.64 -9.34 -0.03 -3.69 16 19 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 20 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 21 H 0.03 1.39 7.79 -2.39 -0.02 1.37 16 22 H 0.03 1.39 7.88 -2.38 -0.02 1.37 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 24 H 0.07 2.25 7.13 -2.39 -0.02 2.23 16 25 H 0.06 1.75 7.14 -2.39 -0.02 1.73 16 26 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.85 7.73 -2.39 -0.02 1.83 16 30 H 0.05 2.23 7.01 -2.38 -0.02 2.21 16 Total: -1.00 -61.28 231.38 4.85 -56.43 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.09 Total: 3.01 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 1.47 Total: -50.57 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.27 Total: -55.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.28 4.85 -56.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.267 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds