Wall clock time and date at job start Mon Mar 30 2020 01:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08994 * 109.98317 * 58.68858 * 9 7 2 11 11 C 1.54215 * 109.99050 * 297.34297 * 9 7 2 12 12 C 1.54963 * 104.25106 * 217.96576 * 11 9 7 13 13 C 1.54538 * 102.51678 * 38.20736 * 12 11 9 14 14 H 1.08995 * 112.76472 * 82.47260 * 13 12 11 15 15 C 1.53438 * 109.90878 * 208.13979 * 13 12 11 16 16 C 1.53540 * 106.32346 * 84.69576 * 15 13 12 17 17 C 1.53382 * 107.25495 * 17.39430 * 16 15 13 18 18 C 1.53785 * 107.62444 * 359.03961 * 17 16 15 19 19 H 1.09005 * 111.83501 * 107.35614 * 18 17 16 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.09001 * 110.48035 * 336.66050 * 11 9 7 22 22 H 1.09001 * 110.47772 * 99.27903 * 11 9 7 23 23 H 1.09004 * 110.80356 * 279.94781 * 12 11 9 24 24 H 1.09007 * 110.96629 * 156.54157 * 12 11 9 25 25 H 1.09003 * 110.08406 * 325.48002 * 15 13 12 26 26 H 1.08997 * 110.13265 * 203.93677 * 15 13 12 27 27 H 1.08998 * 109.88613 * 257.98163 * 16 15 13 28 28 H 1.09005 * 110.01481 * 136.88036 * 16 15 13 29 29 H 1.08998 * 109.82650 * 239.51471 * 17 16 15 30 30 H 1.09001 * 109.82688 * 118.56720 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6002 -2.5535 -0.8785 11 6 0.4162 -2.6261 1.2846 12 6 0.5255 -4.1247 1.6637 13 6 1.9921 -4.4548 1.3054 14 1 2.6927 -4.1670 2.0892 15 6 2.1191 -5.9394 0.9395 16 6 1.7509 -6.0505 -0.5470 17 6 1.8425 -4.6411 -1.1450 18 6 2.2420 -3.6800 -0.0128 19 1 3.2737 -3.3427 -0.1125 20 1 -0.4850 -0.8400 0.0004 21 1 0.8359 -2.0017 2.0733 22 1 -0.6225 -2.3557 1.0949 23 1 -0.1628 -4.7256 1.0693 24 1 0.3447 -4.2718 2.7286 25 1 1.4310 -6.5334 1.5410 26 1 3.1428 -6.2786 1.0978 27 1 0.7348 -6.4315 -0.6497 28 1 2.4491 -6.7153 -1.0556 29 1 0.8751 -4.3492 -1.5535 30 1 2.5979 -4.6212 -1.9306 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:58 Heat of formation + Delta-G solvation = -36.867156 kcal Electronic energy + Delta-G solvation = -11217.704898 eV Core-core repulsion = 9397.031831 eV Total energy + Delta-G solvation = -1820.673067 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99043 -33.97580 -31.56428 -29.59127 -26.54089 -25.64097 -23.03582 -19.79104 -19.49989 -18.24476 -16.93061 -15.36607 -14.28034 -13.71035 -13.38228 -13.06004 -12.66704 -12.38085 -11.53427 -11.05004 -10.86277 -10.76867 -10.42424 -10.26021 -10.07104 -9.94323 -9.72392 -9.64311 -9.42608 -9.23027 -8.27774 -8.23759 -6.23299 -3.94310 3.47702 3.49350 3.67978 4.60321 5.12340 5.19302 5.22037 5.49266 5.76521 5.92236 6.00426 6.03624 6.11093 6.27597 6.31167 6.47044 6.50155 6.57796 6.66458 6.78522 6.85673 6.92604 6.96963 7.22607 7.32088 7.51565 7.79572 8.38212 8.54417 9.00742 9.77014 11.14464 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.068441 B = 0.012571 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.012993 B = 2226.766144 C = 2345.102625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 1.064 2.936 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.046 0.954 9 C 0.035 3.965 10 H 0.019 0.981 11 C -0.111 4.111 12 C -0.118 4.118 13 C -0.090 4.090 14 H 0.071 0.929 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.077 4.077 19 H 0.068 0.932 20 H 0.272 0.728 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -8.730 1.153 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.187 4.187 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.630 4.630 8 H 0.065 0.935 9 C 0.017 3.983 10 H 0.037 0.963 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.108 4.108 14 H 0.089 0.911 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.096 4.096 19 H 0.087 0.913 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.586 -7.077 1.135 7.620 hybrid contribution 0.218 -1.670 -0.013 1.684 sum 2.804 -8.747 1.121 9.253 Atomic orbital electron populations 1.70781 1.06837 1.31010 1.46765 1.25741 0.96613 1.02406 0.93957 0.83612 0.74932 0.75721 0.76404 1.20911 1.21597 1.21601 1.22138 0.93869 0.91731 1.55229 0.93548 1.19616 0.92679 0.93115 0.92914 0.96333 1.22589 0.99398 0.92658 1.00238 1.22514 0.95540 0.98679 0.98817 1.22360 0.96966 0.93278 0.98230 0.91082 1.21977 1.00196 0.97234 0.95949 1.21917 1.00319 0.97658 0.95844 1.22177 1.00980 0.93996 0.98341 1.22379 1.00012 0.95283 0.91917 0.91349 0.91636 0.92439 0.93678 0.92713 0.93482 0.92547 0.92768 0.92732 0.92866 0.92115 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.97 13.42 55.43 0.74 -27.23 16 2 C 0.02 0.48 5.32 -17.82 -0.09 0.39 16 3 Si 1.06 25.63 29.90 -169.99 -5.08 20.55 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.59 -16.84 8.37 -34.44 -0.29 -17.13 16 8 H 0.05 1.32 7.39 -52.49 -0.39 0.93 16 9 C 0.04 0.89 2.08 -90.53 -0.19 0.70 16 10 H 0.02 0.51 6.84 -51.93 -0.36 0.15 16 11 C -0.11 -2.62 5.28 -25.06 -0.13 -2.76 16 12 C -0.12 -2.28 6.10 -24.89 -0.15 -2.43 16 13 C -0.09 -1.68 3.71 -88.56 -0.33 -2.01 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.80 6.15 -26.22 -0.16 -1.96 16 16 C -0.12 -1.85 6.59 -26.25 -0.17 -2.03 16 17 C -0.12 -2.17 6.26 -26.13 -0.16 -2.34 16 18 C -0.08 -1.65 3.42 -88.59 -0.30 -1.95 16 19 H 0.07 1.52 7.51 -51.93 -0.39 1.13 16 20 H 0.27 8.20 5.50 -40.82 -0.22 7.97 16 21 H 0.06 1.47 7.83 -51.93 -0.41 1.06 16 22 H 0.04 1.10 6.93 -51.93 -0.36 0.74 16 23 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 24 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 25 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.18 7.01 -51.93 -0.36 0.82 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 231.60 15.07 3.49 3.49 Total: -1.00 -29.64 231.60 -7.47 -37.11 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.64 Total: -2.40 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -1.98 Total: -31.52 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.74 Total: -27.23 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.64 -7.47 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.244 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds