Wall clock time and date at job start Mon Mar 30 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47353 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47077 * 119.99898 * 3 2 1 6 6 H 1.48500 * 109.47490 * 239.99923 * 3 2 1 7 7 C 1.39925 * 119.99880 * 180.27607 * 2 1 3 8 8 H 1.08003 * 119.99887 * 200.29931 * 7 2 1 9 9 C 1.40902 * 120.00168 * 20.30165 * 7 2 1 10 10 C 1.41934 * 121.12784 * 217.17552 * 9 7 2 11 11 N 1.37884 * 120.68241 * 0.02562 * 10 9 7 12 12 N 1.32824 * 118.63856 * 179.74450 * 10 9 7 13 13 C 1.31865 * 121.11978 * 0.57183 * 12 10 9 14 14 N 1.31932 * 122.58083 * 359.67776 * 13 12 10 15 15 C 1.32634 * 121.20703 * 0.02562 * 14 13 12 16 16 O 1.35320 * 120.64684 * 180.02562 * 15 14 13 17 17 H 0.96996 * 119.99715 * 359.72608 * 1 2 3 18 18 H 0.97000 * 119.99574 * 0.02562 * 11 10 9 19 19 H 0.96993 * 120.00386 * 179.97438 * 11 10 9 20 20 H 1.08005 * 118.70993 * 179.69818 * 13 12 10 21 21 H 0.96705 * 114.00052 * 272.68736 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 1.2782 2.7465 0.0006 5 1 3.0969 1.6964 1.2125 6 1 3.0970 1.6965 -1.2125 7 6 2.0089 -1.2118 -0.0058 8 1 3.0386 -1.2424 0.3185 9 6 1.3700 -2.3921 -0.4349 10 6 1.6291 -3.6372 0.1951 11 7 2.5159 -3.7222 1.2475 12 7 0.9955 -4.7180 -0.2461 13 6 0.1499 -4.6477 -1.2555 14 7 -0.1212 -3.5164 -1.8777 15 6 0.4522 -2.3772 -1.5135 16 8 0.1654 -1.2232 -2.1593 17 1 -0.4849 0.8400 0.0040 18 1 2.9698 -2.9258 1.5647 19 1 2.6853 -4.5782 1.6711 20 1 -0.3402 -5.5518 -1.5857 21 1 0.7167 -1.0601 -2.9369 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260364232.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:14 Heat of formation + Delta-G solvation = 0.787390 kcal Electronic energy + Delta-G solvation = -10716.701061 eV Core-core repulsion = 8592.861469 eV Total energy + Delta-G solvation = -2123.839592 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.13157 -35.95872 -34.34880 -33.09336 -30.41089 -29.22592 -25.46707 -22.08606 -21.54542 -17.58863 -17.49013 -16.83121 -15.37373 -15.06623 -14.18091 -13.51259 -13.40632 -12.99878 -12.32253 -11.81584 -11.27227 -11.00307 -10.67609 -10.28739 -10.21813 -9.36007 -8.79984 -8.08974 -7.76097 -7.10395 -6.72894 -4.31678 2.61663 2.88453 3.07667 3.08570 3.13466 3.93967 4.70286 4.72157 5.20121 5.59717 5.85420 6.52782 6.75928 7.01267 7.21745 7.63635 7.91080 8.11843 8.49058 8.61942 8.73451 9.10530 9.18528 9.88473 10.24255 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.052794 B = 0.018318 C = 0.014515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.232696 B = 1528.194187 C = 1928.619814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.347 3.653 11 N -0.847 5.847 12 N -0.577 5.577 13 C 0.209 3.791 14 N -0.555 5.555 15 C 0.257 3.743 16 O -0.449 6.449 17 H 0.282 0.718 18 H 0.404 0.596 19 H 0.387 0.613 20 H 0.163 0.837 21 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 0.258 0.237 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.498 4.498 8 H 0.096 0.904 9 C -0.027 4.027 10 C 0.099 3.901 11 N -0.394 5.394 12 N -0.303 5.303 13 C -0.077 4.077 14 N -0.283 5.283 15 C 0.073 3.927 16 O -0.250 6.250 17 H 0.093 0.907 18 H 0.235 0.765 19 H 0.214 0.786 20 H 0.180 0.820 21 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.062 -0.244 0.269 3.084 hybrid contribution 1.201 1.541 0.203 1.964 sum 4.264 1.296 0.471 4.481 Atomic orbital electron populations 1.69735 1.07648 1.29592 1.30656 1.25697 0.94465 1.00602 0.92797 0.86422 0.80053 0.80806 0.79645 1.20486 1.19386 1.19002 1.18827 0.98517 0.91406 1.41033 0.90391 1.18671 0.96261 0.92795 0.94936 1.18762 0.92262 0.89816 0.89217 1.41517 1.49237 1.12141 1.36551 1.67292 1.13560 1.31682 1.17768 1.23061 0.97711 0.93998 0.92930 1.67247 1.27326 0.99560 1.34133 1.19035 0.97323 0.83722 0.92639 1.84869 1.61160 1.35471 1.43518 0.90690 0.76522 0.78573 0.82006 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.91 11.18 55.55 0.62 -19.29 14 2 C 0.09 2.13 4.48 -17.31 -0.08 2.05 14 3 Si 0.91 18.20 29.61 -169.99 -5.03 13.16 14 4 H -0.28 -5.61 7.11 56.52 0.40 -5.20 14 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.47 -11.72 8.16 -37.94 -0.31 -12.03 14 8 H 0.08 1.82 7.27 -52.48 -0.38 1.43 14 9 C -0.02 -0.41 5.42 -106.18 -0.58 -0.99 14 10 C 0.35 8.49 7.86 -154.66 -1.22 7.27 14 11 N -0.85 -16.71 8.97 31.55 0.28 -16.42 14 12 N -0.58 -14.09 10.44 -13.35 -0.14 -14.22 14 13 C 0.21 5.05 12.25 -91.98 -1.13 3.92 14 14 N -0.56 -14.52 10.43 -14.09 -0.15 -14.67 14 15 C 0.26 6.90 7.34 -15.91 -0.12 6.78 14 16 O -0.45 -11.36 10.51 -17.65 -0.19 -11.55 14 17 H 0.28 6.92 8.30 -40.82 -0.34 6.58 14 18 H 0.40 7.43 7.42 -40.82 -0.30 7.13 14 19 H 0.39 6.59 8.95 -40.82 -0.37 6.22 14 20 H 0.16 3.30 8.06 -52.48 -0.42 2.87 14 21 H 0.36 7.38 9.06 45.56 0.41 7.79 14 LS Contribution 197.03 15.07 2.97 2.97 Total: -1.00 -30.68 197.03 -5.25 -35.93 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.19 Total: 17.08 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -3.42 Total: 7.01 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.62 Total: -64.61 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.19 Total: -11.55 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -30.68 -5.25 -35.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260364232.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.715 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds