Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30990 * 1 3 3 Si 1.86793 * 120.00493 * 2 1 4 4 H 1.48504 * 109.47224 * 270.00085 * 3 2 1 5 5 H 1.48500 * 109.47247 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.47164 * 150.00410 * 3 2 1 7 7 C 1.39754 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99383 * 179.97438 * 7 2 1 9 9 C 1.41527 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.46560 * 126.89983 * 359.97364 * 9 7 2 11 11 N 1.30227 * 107.36511 * 179.78277 * 10 9 7 12 12 N 1.39724 * 109.58195 * 0.37791 * 11 10 9 13 13 C 1.34777 * 125.24531 * 179.86588 * 12 11 10 14 14 N 1.34773 * 120.00099 * 359.97238 * 13 12 11 15 15 O 1.21503 * 119.99892 * 179.69593 * 13 12 11 16 16 C 1.35097 * 109.51183 * 359.60705 * 12 11 10 17 17 H 0.97011 * 119.99531 * 359.97438 * 1 2 3 18 18 H 1.08001 * 126.31663 * 0.02562 * 10 9 7 19 19 H 0.96998 * 120.00525 * 179.71855 * 14 13 12 20 20 H 0.97000 * 120.00112 * 359.72689 * 14 13 12 21 21 H 1.08004 * 126.33610 * 180.20594 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6176 0.0000 4 1 2.4915 2.0463 -1.4001 5 1 1.4416 2.6526 0.7001 6 1 3.5416 1.4399 0.7000 7 6 2.0086 -1.2104 -0.0005 8 1 3.0885 -1.2104 -0.0010 9 6 1.3008 -2.4360 -0.0005 10 6 -0.1542 -2.6118 0.0005 11 7 -0.3909 -3.8924 -0.0046 12 7 0.8184 -4.5922 -0.0004 13 6 0.9403 -5.9344 -0.0012 14 7 -0.1610 -6.7111 -0.0059 15 8 2.0432 -6.4443 -0.0028 16 6 1.8467 -3.7160 -0.0010 17 1 -0.4850 0.8402 0.0004 18 1 -0.8937 -1.8247 0.0011 19 1 -0.0734 -7.6771 -0.0106 20 1 -1.0415 -6.3042 -0.0047 21 1 2.8981 -3.9632 -0.0016 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428960.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = 32.026626 kcal Electronic energy + Delta-G solvation = -10321.729964 eV Core-core repulsion = 8199.245006 eV Total energy + Delta-G solvation = -2122.484957 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.20040 -37.79713 -33.79157 -33.15044 -30.60464 -29.32536 -25.37119 -22.31541 -19.99750 -19.10532 -17.98701 -16.79262 -15.50940 -15.06518 -15.01247 -14.43716 -13.18416 -12.77020 -12.35754 -11.63732 -11.29389 -11.24259 -10.78064 -10.31000 -9.96581 -9.51494 -9.32442 -9.23666 -8.43701 -7.58087 -6.76865 -4.29091 2.38132 3.02479 3.08924 3.13480 3.44451 3.94658 4.02221 4.14405 4.62772 5.30930 6.28643 6.37947 6.94173 7.18933 7.19813 7.28288 7.54710 7.73742 8.26009 8.34490 8.60278 8.84414 8.98411 9.25332 10.23953 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.102947 B = 0.010886 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.918161 B = 2571.401163 C = 2833.476586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.070 3.930 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.429 4.429 8 H 0.079 0.921 9 C 0.004 3.996 10 C 0.095 3.905 11 N -0.338 5.338 12 N -0.368 5.368 13 C 0.730 3.270 14 N -0.855 5.855 15 O -0.589 6.589 16 C -0.143 4.143 17 H 0.281 0.719 18 H 0.214 0.786 19 H 0.408 0.592 20 H 0.407 0.593 21 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 -1.747 0.000 3.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.143 4.143 3 Si 0.749 3.251 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.462 4.462 8 H 0.098 0.902 9 C -0.004 4.004 10 C -0.100 4.100 11 N -0.156 5.156 12 N -0.172 5.172 13 C 0.431 3.569 14 N -0.422 5.422 15 O -0.465 6.465 16 C -0.273 4.273 17 H 0.092 0.908 18 H 0.230 0.770 19 H 0.239 0.761 20 H 0.237 0.763 21 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.674 -2.777 0.001 3.855 hybrid contribution 0.584 1.127 -0.006 1.269 sum -2.089 -1.650 -0.005 2.662 Atomic orbital electron populations 1.69417 1.07417 1.29054 1.40351 1.25810 0.94923 1.01322 0.92266 0.86045 0.80025 0.79963 0.79060 1.19577 1.20300 1.18754 1.18873 0.94339 0.88575 1.44386 0.90235 1.19404 0.90795 0.91926 0.98323 1.26678 0.98206 0.91518 0.93580 1.76397 1.05123 1.08074 1.26037 1.45061 1.05953 1.03883 1.62258 1.15321 0.84492 0.79658 0.77454 1.42873 1.08466 1.09445 1.81385 1.90895 1.25387 1.72227 1.58016 1.22051 0.92418 0.88042 1.24818 0.90822 0.77044 0.76060 0.76349 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.09 10.39 55.54 0.58 -19.51 14 2 C 0.07 1.69 5.49 -17.34 -0.10 1.59 14 3 Si 0.92 18.32 29.56 -169.99 -5.02 13.29 14 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 14 7 C -0.43 -11.14 9.41 -37.76 -0.36 -11.50 14 8 H 0.08 2.00 7.84 -52.49 -0.41 1.58 14 9 C 0.00 0.11 6.08 -104.95 -0.64 -0.53 14 10 C 0.10 2.38 11.10 -14.88 -0.17 2.21 14 11 N -0.34 -8.02 11.62 32.01 0.37 -7.65 14 12 N -0.37 -8.98 3.59 -15.77 -0.06 -9.03 14 13 C 0.73 16.27 8.79 -86.92 -0.76 15.50 14 14 N -0.85 -14.01 8.87 27.62 0.24 -13.77 14 15 O -0.59 -14.57 17.39 5.36 0.09 -14.47 14 16 C -0.14 -3.70 11.03 -15.77 -0.17 -3.87 14 17 H 0.28 6.17 8.30 -40.82 -0.34 5.84 14 18 H 0.21 5.13 5.95 -52.49 -0.31 4.82 14 19 H 0.41 5.33 8.93 -40.82 -0.36 4.96 14 20 H 0.41 6.15 8.21 -40.82 -0.34 5.81 14 21 H 0.15 3.86 8.02 -52.48 -0.42 3.44 14 LS Contribution 201.87 15.07 3.04 3.04 Total: -1.00 -29.04 201.87 -3.92 -32.96 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -0.98 Total: 11.73 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.19 Total: 3.41 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 1.14 Total: -49.96 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -29.04 -3.92 -32.96 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428960.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.989 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds