Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 115.56051 * 2 1 4 4 C 1.53782 * 113.61144 * 63.18292 * 3 2 1 5 5 C 1.53789 * 87.07850 * 220.01812 * 4 3 2 6 6 C 1.53780 * 87.08017 * 25.43863 * 5 4 3 7 7 C 1.52998 * 117.49932 * 214.30700 * 2 1 3 8 8 C 1.52993 * 60.00221 * 252.51260 * 7 2 1 9 9 H 1.08995 * 117.50325 * 107.51405 * 8 7 2 10 10 C 1.50706 * 117.49875 * 252.51552 * 8 7 2 11 11 H 1.07995 * 120.00167 * 68.32915 * 10 8 7 12 12 C 1.37879 * 119.99394 * 248.60614 * 10 8 7 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 H 1.08998 * 109.47488 * 299.89185 * 1 2 3 19 19 H 1.09000 * 109.46943 * 59.90072 * 1 2 3 20 20 H 1.09002 * 109.46910 * 179.89479 * 1 2 3 21 21 H 1.09000 * 112.84650 * 194.49188 * 3 2 1 22 22 H 1.08993 * 113.61581 * 334.56886 * 4 3 2 23 23 H 1.09001 * 113.61111 * 105.47652 * 4 3 2 24 24 H 1.08997 * 113.61601 * 270.88559 * 5 4 3 25 25 H 1.09000 * 113.61057 * 139.98416 * 5 4 3 26 26 H 1.09006 * 113.61196 * 220.02226 * 6 5 4 27 27 H 1.08994 * 113.62007 * 89.11156 * 6 5 4 28 28 H 1.09005 * 117.49410 * 145.01849 * 7 2 1 29 29 H 1.09006 * 117.52249 * 359.97438 * 7 2 1 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 1.8824 2.2102 1.2575 5 6 1.7597 3.4288 0.3274 6 6 1.4059 2.4381 -0.7943 7 6 2.2365 -1.1210 -0.7649 8 6 2.2364 -1.1210 0.7650 9 1 1.6116 -1.8587 1.2684 10 6 3.5293 -0.7810 1.4609 11 1 3.9257 0.2220 1.4039 12 6 4.2088 -1.7519 2.1656 13 7 5.3373 -1.4553 2.7724 14 14 3.5275 -3.4888 2.2572 15 1 4.0593 -4.2895 1.1252 16 1 3.9362 -4.1137 3.5407 17 1 2.0453 -3.4438 2.1783 18 1 -0.3634 0.5121 0.8909 19 1 -0.3633 0.5154 -0.8891 20 1 -0.3633 -1.0277 -0.0019 21 1 3.2501 1.3425 -0.2514 22 1 0.9462 1.9358 1.7435 23 1 2.7188 2.2747 1.9535 24 1 2.7023 3.9521 0.1667 25 1 0.9420 4.0992 0.5918 26 1 1.8577 2.6865 -1.7547 27 1 0.3394 2.2260 -0.8692 28 1 3.1716 -0.8751 -1.2682 29 1 1.6116 -1.8590 -1.2680 30 1 5.8156 -2.1385 3.2678 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = 28.740719 kcal Electronic energy + Delta-G solvation = -11007.608338 eV Core-core repulsion = 9189.780242 eV Total energy + Delta-G solvation = -1817.828096 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.93043 -35.55132 -32.21734 -28.31245 -25.32409 -25.05850 -24.83179 -20.21375 -19.42947 -17.59975 -16.77980 -15.16892 -14.56578 -13.72609 -13.33740 -12.88373 -12.71142 -12.35969 -11.76992 -11.31050 -11.25888 -11.01167 -10.92141 -10.82600 -9.99446 -9.90434 -9.73529 -9.64908 -9.21455 -8.93374 -8.40224 -8.14705 -6.05919 -4.00573 3.33026 3.39505 3.41501 4.45190 4.78599 5.23641 5.29601 5.33470 5.42587 5.78481 5.84769 5.93731 6.06941 6.12185 6.28721 6.34131 6.37370 6.48686 6.53345 6.63638 6.70793 6.80399 6.85664 6.96531 7.21190 7.29725 7.37465 7.81075 8.60069 9.00165 9.57568 11.05932 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.051641 B = 0.014019 C = 0.012083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.071728 B = 1996.820144 C = 2316.722083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.046 4.046 4 C -0.125 4.125 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.209 4.209 8 C -0.011 4.011 9 H 0.068 0.932 10 C -0.478 4.478 11 H 0.081 0.919 12 C 0.070 3.930 13 N -0.901 5.901 14 Si 0.883 3.117 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.265 1.265 18 H 0.050 0.950 19 H 0.047 0.953 20 H 0.045 0.955 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 4.207 -4.713 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.065 4.065 4 C -0.162 4.162 5 C -0.184 4.184 6 C -0.182 4.182 7 C -0.247 4.247 8 C -0.030 4.030 9 H 0.086 0.914 10 C -0.515 4.515 11 H 0.099 0.901 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.711 3.289 15 H -0.203 1.203 16 H -0.217 1.217 17 H -0.190 1.190 18 H 0.069 0.931 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.755 4.132 -4.584 9.911 hybrid contribution -0.208 -1.003 -0.002 1.024 sum -7.963 3.129 -4.586 9.707 Atomic orbital electron populations 1.21252 0.94370 1.00389 1.00266 1.21247 0.92265 0.90938 1.09420 1.21723 0.98676 0.90894 0.95164 1.22791 1.01725 0.94781 0.96941 1.22849 1.00680 0.96626 0.98278 1.23088 1.00635 0.97425 0.97039 1.23257 1.00880 1.00901 0.99667 1.20516 0.97462 0.95469 0.89541 0.91450 1.20625 1.03140 0.98363 1.29386 0.90124 1.25024 0.94660 0.98745 0.94707 1.69904 1.15911 1.34154 1.33869 0.86742 0.79897 0.85003 0.77294 1.20329 1.21657 1.19023 0.93086 0.93455 0.93594 0.89389 0.90802 0.91450 0.90903 0.92551 0.92675 0.90391 0.90073 0.91815 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.67 37.16 0.32 -1.49 16 2 C -0.14 -2.81 2.13 -154.51 -0.33 -3.14 16 3 C -0.05 -0.89 2.54 -89.80 -0.23 -1.12 16 4 C -0.12 -2.27 7.47 -25.91 -0.19 -2.46 16 5 C -0.15 -2.23 8.08 -25.91 -0.21 -2.44 16 6 C -0.14 -2.28 7.42 -25.92 -0.19 -2.47 16 7 C -0.21 -4.50 9.65 -26.74 -0.26 -4.76 16 8 C -0.01 -0.27 4.54 -91.77 -0.42 -0.68 16 9 H 0.07 1.64 5.90 -51.93 -0.31 1.34 16 10 C -0.48 -13.32 9.26 -34.44 -0.32 -13.64 16 11 H 0.08 2.40 6.61 -52.49 -0.35 2.05 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 14 Si 0.88 21.77 27.75 -169.99 -4.72 17.05 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.28 6.03 56.52 0.34 -5.94 16 18 H 0.05 0.83 7.16 -51.93 -0.37 0.46 16 19 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 20 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 21 H 0.09 1.88 7.47 -51.93 -0.39 1.49 16 22 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.16 5.96 -51.93 -0.31 0.85 16 28 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 239.32 15.07 3.61 3.61 Total: -1.00 -28.88 239.32 -6.85 -35.73 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.59 Total: 0.47 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -1.92 Total: -30.26 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.88 -6.85 -35.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.474 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds