Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 115.56051 * 2 1 4 4 C 1.53782 * 113.61144 * 63.18292 * 3 2 1 5 5 C 1.53789 * 87.07850 * 220.01812 * 4 3 2 6 6 C 1.53780 * 87.08017 * 25.43863 * 5 4 3 7 7 C 1.52998 * 117.49932 * 214.30700 * 2 1 3 8 8 C 1.52993 * 60.00221 * 252.51260 * 7 2 1 9 9 H 1.08995 * 117.50325 * 107.51405 * 8 7 2 10 10 C 1.50706 * 117.49875 * 252.51552 * 8 7 2 11 11 H 1.07995 * 120.00167 * 68.32915 * 10 8 7 12 12 C 1.37879 * 119.99394 * 248.60614 * 10 8 7 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 H 1.08998 * 109.47488 * 299.89185 * 1 2 3 19 19 H 1.09000 * 109.46943 * 59.90072 * 1 2 3 20 20 H 1.09002 * 109.46910 * 179.89479 * 1 2 3 21 21 H 1.09000 * 112.84650 * 194.49188 * 3 2 1 22 22 H 1.08993 * 113.61581 * 334.56886 * 4 3 2 23 23 H 1.09001 * 113.61111 * 105.47652 * 4 3 2 24 24 H 1.08997 * 113.61601 * 270.88559 * 5 4 3 25 25 H 1.09000 * 113.61057 * 139.98416 * 5 4 3 26 26 H 1.09006 * 113.61196 * 220.02226 * 6 5 4 27 27 H 1.08994 * 113.62007 * 89.11156 * 6 5 4 28 28 H 1.09005 * 117.49410 * 145.01849 * 7 2 1 29 29 H 1.09006 * 117.52249 * 359.97438 * 7 2 1 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 1.8824 2.2102 1.2575 5 6 1.7597 3.4288 0.3274 6 6 1.4059 2.4381 -0.7943 7 6 2.2365 -1.1210 -0.7649 8 6 2.2364 -1.1210 0.7650 9 1 1.6116 -1.8587 1.2684 10 6 3.5293 -0.7810 1.4609 11 1 3.9257 0.2220 1.4039 12 6 4.2088 -1.7519 2.1656 13 7 5.3373 -1.4553 2.7724 14 14 3.5275 -3.4888 2.2572 15 1 4.0593 -4.2895 1.1252 16 1 3.9362 -4.1137 3.5407 17 1 2.0453 -3.4438 2.1783 18 1 -0.3634 0.5121 0.8909 19 1 -0.3633 0.5154 -0.8891 20 1 -0.3633 -1.0277 -0.0019 21 1 3.2501 1.3425 -0.2514 22 1 0.9462 1.9358 1.7435 23 1 2.7188 2.2747 1.9535 24 1 2.7023 3.9521 0.1667 25 1 0.9420 4.0992 0.5918 26 1 1.8577 2.6865 -1.7547 27 1 0.3394 2.2260 -0.8692 28 1 3.1716 -0.8751 -1.2682 29 1 1.6116 -1.8590 -1.2680 30 1 5.8156 -2.1385 3.2678 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = 12.596234 kcal Electronic energy + Delta-G solvation = -11008.308415 eV Core-core repulsion = 9189.780242 eV Total energy + Delta-G solvation = -1818.528173 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45057 -37.17110 -34.35943 -29.93434 -27.24944 -26.47186 -26.26675 -22.07607 -20.90060 -19.31552 -18.69927 -16.81253 -16.22255 -15.49701 -15.03888 -14.63535 -14.20913 -13.88479 -13.31553 -13.05363 -12.77923 -12.75526 -12.59409 -12.30116 -11.78334 -11.43947 -11.42781 -11.21277 -11.03073 -10.87574 -10.25616 -9.88610 -8.25559 -6.23711 1.36749 1.38038 1.48091 2.38418 2.90506 3.41468 3.88122 3.93930 4.01289 4.30554 4.32033 4.47387 4.57713 4.65947 4.89354 4.94233 5.00603 5.05754 5.11311 5.13139 5.16994 5.28783 5.33836 5.43189 5.52585 5.70198 5.73931 5.84749 6.41999 6.78684 7.36727 8.89990 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.051641 B = 0.014019 C = 0.012083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.071728 B = 1996.820144 C = 2316.722083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.118 4.118 3 C -0.066 4.066 4 C -0.132 4.132 5 C -0.132 4.132 6 C -0.126 4.126 7 C -0.201 4.201 8 C -0.049 4.049 9 H 0.070 0.930 10 C -0.478 4.478 11 H 0.042 0.958 12 C 0.006 3.994 13 N -0.953 5.953 14 Si 0.950 3.050 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.245 1.245 18 H 0.059 0.941 19 H 0.075 0.925 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 4.156 -6.026 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.084 4.084 4 C -0.169 4.169 5 C -0.170 4.170 6 C -0.163 4.163 7 C -0.238 4.238 8 C -0.067 4.067 9 H 0.088 0.912 10 C -0.515 4.515 11 H 0.060 0.940 12 C -0.190 4.190 13 N -0.594 5.594 14 Si 0.775 3.225 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.169 1.169 18 H 0.078 0.922 19 H 0.094 0.906 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.101 0.899 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.624 4.092 -5.914 12.829 hybrid contribution 0.722 -0.895 0.388 1.214 sum -9.902 3.197 -5.526 11.781 Atomic orbital electron populations 1.21287 0.91038 1.01597 1.02096 1.21467 0.94579 0.90271 1.05470 1.21769 0.97381 0.91906 0.97348 1.22822 1.00739 0.96934 0.96408 1.22785 1.01848 0.95878 0.96453 1.23020 1.01118 0.95035 0.97169 1.23216 1.01066 1.02291 0.97262 1.20409 0.96634 0.98819 0.90868 0.91214 1.20818 1.04688 0.96698 1.29307 0.93994 1.25927 0.94950 1.03412 0.94731 1.70058 1.17812 1.35689 1.35795 0.85662 0.80209 0.79351 0.77284 1.19755 1.21495 1.16917 0.92198 0.90599 0.92839 0.93087 0.89941 0.94813 0.90834 0.89694 0.91530 0.88266 0.91703 0.89073 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.09 8.67 71.98 0.62 -2.47 16 2 C -0.12 -4.56 2.13 -52.18 -0.11 -4.67 16 3 C -0.07 -2.49 2.54 -10.26 -0.03 -2.51 16 4 C -0.13 -4.73 7.47 31.12 0.23 -4.50 16 5 C -0.13 -3.68 8.08 31.12 0.25 -3.43 16 6 C -0.13 -3.56 7.42 31.12 0.23 -3.33 16 7 C -0.20 -8.32 9.65 30.59 0.30 -8.02 16 8 C -0.05 -2.31 4.54 -11.54 -0.05 -2.37 16 9 H 0.07 3.28 5.90 -2.39 -0.01 3.26 16 10 C -0.48 -27.61 9.26 25.60 0.24 -27.37 16 11 H 0.04 2.67 6.61 -2.91 -0.02 2.65 16 12 C 0.01 0.36 5.47 84.66 0.46 0.83 16 13 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 14 Si 0.95 45.31 27.75 68.60 1.90 47.22 16 15 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 H -0.25 -10.78 6.03 99.48 0.60 -10.18 16 18 H 0.06 1.70 7.16 -2.39 -0.02 1.69 16 19 H 0.08 1.87 6.70 -2.39 -0.02 1.86 16 20 H 0.05 1.53 8.11 -2.39 -0.02 1.51 16 21 H 0.05 2.28 7.47 -2.39 -0.02 2.26 16 22 H 0.08 2.79 7.05 -2.39 -0.02 2.77 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.10 2.42 5.96 -2.39 -0.01 2.40 16 28 H 0.06 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 30 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -64.62 239.32 5.34 -59.28 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.99 Total: 11.51 kcal Atomic # 6 Polarization: -59.98 SS G_CDS: 2.14 Total: -57.83 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.30 Total: -60.18 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.22 kcal Total: -64.62 5.34 -59.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.878 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds