Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55297 * 2 1 4 4 C 1.53784 * 113.61330 * 325.58068 * 3 2 1 5 5 C 1.53787 * 87.07923 * 139.97966 * 4 3 2 6 6 C 1.53778 * 87.08035 * 334.56830 * 5 4 3 7 7 C 1.53001 * 117.49669 * 214.32508 * 2 1 3 8 8 C 1.53005 * 117.49818 * 145.66811 * 2 1 3 9 9 H 1.08990 * 117.50174 * 215.00463 * 8 2 1 10 10 C 1.50704 * 117.49506 * 0.02562 * 8 2 1 11 11 H 1.07998 * 120.00090 * 359.97438 * 10 8 2 12 12 C 1.37881 * 119.99852 * 180.02562 * 10 8 2 13 13 N 1.31512 * 120.00027 * 180.02562 * 12 10 8 14 14 Si 1.86803 * 119.99672 * 359.97438 * 12 10 8 15 15 H 1.48497 * 109.47037 * 90.00854 * 14 12 10 16 16 H 1.48504 * 109.46894 * 210.00266 * 14 12 10 17 17 H 1.48499 * 109.47248 * 330.00395 * 14 12 10 18 18 H 1.09008 * 109.47061 * 59.99930 * 1 2 3 19 19 H 1.08997 * 109.47513 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47379 * 300.00278 * 1 2 3 21 21 H 1.09000 * 112.90903 * 194.32696 * 3 2 1 22 22 H 1.09004 * 113.61451 * 25.43452 * 4 3 2 23 23 H 1.08994 * 113.61477 * 254.52754 * 4 3 2 24 24 H 1.08998 * 113.61103 * 89.12089 * 5 4 3 25 25 H 1.08999 * 113.61167 * 220.01551 * 5 4 3 26 26 H 1.08999 * 113.61111 * 139.98327 * 6 5 4 27 27 H 1.08999 * 113.61280 * 270.79710 * 6 5 4 28 28 H 1.08990 * 117.50272 * 359.97438 * 7 2 1 29 29 H 1.09001 * 117.49489 * 144.99827 * 7 2 1 30 30 H 0.96995 * 119.99617 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.4069 2.4375 -0.7965 5 6 1.7587 3.4290 0.3252 6 6 1.8800 2.2113 1.2563 7 6 2.2364 -1.1208 -0.7653 8 6 2.2364 -1.1208 0.7654 9 1 3.1712 -0.8747 1.2690 10 6 1.3719 -2.1404 1.4611 11 1 0.2960 -2.0626 1.4080 12 6 1.9545 -3.1721 2.1663 13 7 1.2000 -4.0622 2.7730 14 14 3.8154 -3.3062 2.2588 15 1 4.3079 -2.5520 3.4394 16 1 4.2030 -4.7341 2.3867 17 1 4.4145 -2.7393 1.0239 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 3.2506 1.3435 -0.2485 22 1 0.3405 2.2252 -0.8730 23 1 1.8602 2.6852 -1.7563 24 1 2.7014 3.9523 0.1655 25 1 0.9404 4.0996 0.5876 26 1 2.7152 2.2764 1.9537 27 1 0.9433 1.9380 1.7421 28 1 1.6112 -1.8584 -1.2684 29 1 3.1712 -0.8747 -1.2688 30 1 1.6099 -4.7882 3.2688 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443264.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = 28.419015 kcal Electronic energy + Delta-G solvation = -10923.090388 eV Core-core repulsion = 9105.248342 eV Total energy + Delta-G solvation = -1817.842046 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.03248 -35.72194 -32.16124 -27.91470 -26.06278 -25.19472 -24.60641 -20.26475 -19.42962 -17.65825 -16.79669 -15.25982 -14.73094 -14.23947 -13.16077 -12.83814 -12.46445 -12.11695 -11.90884 -11.58309 -11.33455 -11.02932 -10.93832 -10.70447 -10.10725 -10.07943 -9.93344 -9.73196 -9.16247 -8.96877 -8.40106 -8.20088 -6.07398 -4.02297 3.30921 3.39064 3.45538 4.45156 4.74297 5.07173 5.10729 5.15689 5.31067 5.68043 5.84258 5.89363 6.01806 6.09362 6.16788 6.20728 6.30333 6.35352 6.44531 6.65319 6.77234 6.78941 6.83277 6.92722 7.09375 7.27627 7.37589 7.80309 8.58091 8.98063 9.56361 11.04405 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.057205 B = 0.012347 C = 0.011703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.346982 B = 2267.297357 C = 2391.998328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.136 4.136 3 C -0.066 4.066 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.132 4.132 7 C -0.207 4.207 8 C -0.002 4.002 9 H 0.060 0.940 10 C -0.485 4.485 11 H 0.081 0.919 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.264 1.264 18 H 0.036 0.964 19 H 0.065 0.935 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 10.594 -4.789 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.175 4.175 5 C -0.184 4.184 6 C -0.169 4.169 7 C -0.245 4.245 8 C -0.021 4.021 9 H 0.077 0.923 10 C -0.522 4.522 11 H 0.099 0.901 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.188 1.188 18 H 0.055 0.945 19 H 0.084 0.916 20 H 0.066 0.934 21 H 0.096 0.904 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.062 10.413 -4.665 11.595 hybrid contribution 1.059 -0.200 0.048 1.079 sum 3.121 10.213 -4.617 11.635 Atomic orbital electron populations 1.21156 0.93371 1.01953 0.99046 1.21241 0.94024 0.89105 1.09300 1.21948 0.98149 0.92459 0.95875 1.23012 1.01178 0.96501 0.96838 1.22841 1.00847 0.96565 0.98104 1.22885 1.02108 0.95361 0.96550 1.23250 1.00331 1.01328 0.99628 1.20265 0.96760 0.95527 0.89525 0.92252 1.20642 0.94377 1.07408 1.29725 0.90145 1.25017 0.98129 0.95310 0.94596 1.69897 1.35496 1.14670 1.33638 0.86760 0.86338 0.77080 0.78989 1.20376 1.21535 1.18805 0.94468 0.91581 0.93437 0.90430 0.89742 0.92506 0.90981 0.92134 0.92231 0.89790 0.90036 0.91846 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 8.02 37.16 0.30 -1.62 16 2 C -0.14 -2.78 2.13 -154.51 -0.33 -3.11 16 3 C -0.07 -1.13 3.75 -89.81 -0.34 -1.47 16 4 C -0.14 -2.00 7.42 -25.91 -0.19 -2.19 16 5 C -0.15 -1.94 8.08 -25.92 -0.21 -2.15 16 6 C -0.13 -2.09 7.54 -25.92 -0.20 -2.29 16 7 C -0.21 -4.51 9.66 -26.69 -0.26 -4.76 16 8 C 0.00 -0.05 4.47 -91.73 -0.41 -0.46 16 9 H 0.06 1.44 6.47 -51.93 -0.34 1.11 16 10 C -0.48 -13.64 9.16 -34.44 -0.32 -13.95 16 11 H 0.08 2.41 6.30 -52.49 -0.33 2.08 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 14 Si 0.88 21.82 27.18 -169.99 -4.62 17.20 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.26 -6.35 6.93 56.52 0.39 -5.96 16 18 H 0.04 0.63 6.71 -51.92 -0.35 0.28 16 19 H 0.07 1.43 6.42 -51.93 -0.33 1.09 16 20 H 0.05 0.89 7.16 -51.93 -0.37 0.52 16 21 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 22 H 0.08 1.23 5.96 -51.93 -0.31 0.92 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.40 7.05 -51.93 -0.37 1.03 16 28 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 239.34 15.07 3.61 3.61 Total: -1.00 -29.15 239.34 -6.79 -35.93 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.50 Total: -0.04 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -2.05 Total: -30.03 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.62 Total: 17.20 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.15 -6.79 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443264.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.351 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds