Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48487 * 109.46921 * 269.99953 * 3 2 1 5 5 H 1.48501 * 109.47069 * 30.00083 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99737 * 3 2 1 7 7 C 1.37879 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99680 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00172 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.83465 * 62.27436 * 9 7 2 11 11 C 1.54846 * 110.94596 * 186.04097 * 9 7 2 12 12 O 1.44128 * 101.26041 * 141.19587 * 11 9 7 13 13 C 1.34601 * 107.75521 * 335.69307 * 12 11 9 14 14 C 1.50701 * 122.93615 * 197.08208 * 13 12 11 15 15 C 1.53000 * 117.49727 * 84.70419 * 14 13 12 16 16 C 1.53002 * 60.02940 * 107.49982 * 15 14 13 17 17 N 1.28637 * 114.12051 * 16.80752 * 13 12 11 18 18 H 0.97007 * 119.99773 * 359.97438 * 1 2 3 19 19 H 1.08991 * 111.07825 * 259.37470 * 11 9 7 20 20 H 1.09000 * 111.07666 * 23.37752 * 11 9 7 21 21 H 1.08999 * 115.54923 * 299.03618 * 14 13 12 22 22 H 1.09002 * 117.49833 * 215.00087 * 15 14 13 23 23 H 1.09002 * 117.49953 * 0.02562 * 15 14 13 24 24 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 25 25 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8989 -0.7200 0.9029 11 6 4.0651 -2.6323 -0.1505 12 8 5.1948 -2.4091 -1.0173 13 6 4.9644 -1.2775 -1.7088 14 6 5.7192 -0.9148 -2.9616 15 6 5.2130 -1.4942 -4.2841 16 6 5.0145 -0.0091 -3.9745 17 7 4.0396 -0.5355 -1.2097 18 1 -0.4850 0.8401 0.0004 19 1 4.3800 -3.0347 0.8122 20 1 3.3335 -3.2858 -0.6256 21 1 6.7963 -0.7959 -2.8437 22 1 5.9571 -1.7564 -5.0363 23 1 4.3338 -2.1374 -4.2480 24 1 5.6278 0.7058 -4.5231 25 1 4.0049 0.3244 -3.7344 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454949.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = -9.982116 kcal Electronic energy + Delta-G solvation = -10804.071309 eV Core-core repulsion = 8783.305060 eV Total energy + Delta-G solvation = -2020.766250 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.96666 -37.91847 -35.50815 -33.88100 -31.33787 -27.30395 -24.87723 -23.34458 -22.64468 -20.67428 -19.06910 -17.82677 -17.36355 -16.52973 -16.22370 -15.27505 -14.83630 -14.80806 -14.17791 -13.23598 -12.84040 -12.66763 -12.39368 -12.25554 -12.13621 -11.86091 -11.45181 -11.34183 -11.07206 -10.71242 -9.88511 -8.41759 -6.53848 1.28528 1.33306 1.41517 1.54924 2.28345 2.36264 2.83662 2.98275 3.51756 3.90552 3.96239 4.04217 4.16230 4.23042 4.55781 4.70005 4.79771 4.94057 5.01149 5.14034 5.29644 5.38960 5.64250 6.05679 6.48859 6.97578 7.22046 8.71921 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.043395 B = 0.016511 C = 0.013929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.078539 B = 1695.453261 C = 2009.645283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.047 0.953 9 C 0.114 3.886 10 H 0.054 0.946 11 C 0.039 3.961 12 O -0.356 6.356 13 C 0.297 3.703 14 C -0.107 4.107 15 C -0.143 4.143 16 C -0.155 4.155 17 N -0.558 5.558 18 H 0.270 0.730 19 H 0.126 0.874 20 H 0.071 0.929 21 H 0.159 0.841 22 H 0.143 0.857 23 H 0.078 0.922 24 H 0.136 0.864 25 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 -1.176 -6.633 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.166 4.166 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.561 4.561 8 H 0.065 0.935 9 C 0.006 3.994 10 H 0.071 0.929 11 C -0.037 4.037 12 O -0.261 6.261 13 C 0.070 3.930 14 C -0.125 4.125 15 C -0.181 4.181 16 C -0.192 4.192 17 N -0.293 5.293 18 H 0.079 0.921 19 H 0.144 0.856 20 H 0.089 0.911 21 H 0.177 0.823 22 H 0.161 0.839 23 H 0.097 0.903 24 H 0.154 0.846 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.374 -0.466 -6.664 14.062 hybrid contribution -0.324 -0.071 0.757 0.827 sum 12.051 -0.536 -5.907 13.431 Atomic orbital electron populations 1.70030 1.08038 1.28514 1.51000 1.25746 0.95306 1.03186 0.92354 0.85200 0.77733 0.77842 0.78613 1.19900 1.22520 1.19311 1.20889 0.88897 0.93756 1.52511 0.93477 1.21556 0.95950 0.90600 0.91290 0.92854 1.24505 0.85977 0.98461 0.94764 1.86777 1.43113 1.42718 1.53486 1.25196 0.91393 0.83383 0.93043 1.20640 0.99409 1.08812 0.83680 1.23125 1.03397 0.95888 0.95689 1.23053 1.01672 0.94577 0.99907 1.74489 1.12072 1.31008 1.11682 0.92129 0.85635 0.91063 0.82336 0.83863 0.90336 0.84563 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 15 2 C 0.03 2.10 5.47 84.66 0.46 2.56 15 3 Si 0.98 50.61 26.22 68.60 1.80 52.41 15 4 H -0.27 -14.06 7.11 99.48 0.71 -13.36 15 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 15 6 H -0.27 -13.53 6.61 99.48 0.66 -12.87 15 7 C -0.52 -31.02 9.37 25.60 0.24 -30.78 15 8 H 0.05 3.00 7.91 -2.91 -0.02 2.97 15 9 C 0.11 5.71 2.96 44.66 0.13 5.84 15 10 H 0.05 2.71 7.41 -2.39 -0.02 2.69 15 11 C 0.04 1.63 7.72 72.61 0.56 2.19 15 12 O -0.36 -14.14 11.16 -78.66 -0.88 -15.02 15 13 C 0.30 11.93 7.40 88.58 0.66 12.58 15 14 C -0.11 -3.07 6.33 -11.52 -0.07 -3.14 15 15 C -0.14 -3.40 10.23 30.60 0.31 -3.08 15 16 C -0.16 -4.17 10.09 30.62 0.31 -3.86 15 17 N -0.56 -26.96 8.78 -432.77 -3.80 -30.76 15 18 H 0.27 16.05 8.31 -92.70 -0.77 15.28 15 19 H 0.13 4.32 8.14 -2.39 -0.02 4.30 15 20 H 0.07 3.01 7.81 -2.39 -0.02 3.00 15 21 H 0.16 3.45 8.14 -2.39 -0.02 3.43 15 22 H 0.14 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.08 2.18 8.14 -2.39 -0.02 2.17 15 24 H 0.14 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.07 2.49 7.97 -2.39 -0.02 2.47 15 Total: -1.00 -70.82 220.63 1.15 -69.68 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.13 Total: 0.80 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 2.60 Total: -17.69 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.50 Total: -90.17 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.88 Total: -15.02 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.80 Total: 52.41 kcal Total: -70.82 1.15 -69.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454949.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.693 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds