Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00524 * 2 1 4 4 H 1.48502 * 109.46887 * 240.00083 * 3 2 1 5 5 H 1.48508 * 109.46730 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47312 * 119.99277 * 3 2 1 7 7 C 1.38956 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 162.17465 * 7 2 1 9 9 N 1.37100 * 119.99868 * 342.16822 * 7 2 1 10 10 C 1.46652 * 120.15658 * 351.56838 * 9 7 2 11 11 C 1.53281 * 110.30141 * 184.21199 * 10 9 7 12 12 C 1.53773 * 113.19902 * 44.24753 * 11 10 9 13 13 C 1.57375 * 84.43824 * 279.66627 * 12 11 10 14 14 C 1.54053 * 85.36063 * 328.64038 * 13 12 11 15 15 C 1.35165 * 120.15744 * 171.58509 * 9 7 2 16 16 O 1.21294 * 121.56629 * 358.30243 * 15 9 7 17 17 H 0.97005 * 120.00066 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.33463 * 304.46775 * 10 9 7 19 19 H 1.08999 * 109.33378 * 63.95591 * 10 9 7 20 20 H 1.09005 * 113.68572 * 177.40219 * 11 10 9 21 21 H 1.09007 * 113.90334 * 34.29778 * 12 11 10 22 22 H 1.09003 * 113.90634 * 166.12063 * 12 11 10 23 23 H 1.09002 * 117.40535 * 211.29379 * 13 12 11 24 24 H 1.08997 * 113.87759 * 277.08758 * 14 13 12 25 25 H 1.08998 * 113.87802 * 145.33759 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0499 -1.2260 -0.2858 9 7 1.3726 -2.3620 0.3646 10 6 0.0199 -2.3137 0.9291 11 6 -0.4309 -3.7168 1.3506 12 6 0.6565 -4.5020 2.1027 13 6 1.2287 -4.7881 0.6648 14 6 -0.2405 -4.7310 0.2051 15 6 1.9893 -3.5542 0.2054 16 8 3.0954 -3.6364 -0.2855 17 1 -0.4850 0.8401 -0.0004 18 1 0.0150 -1.6567 1.7987 19 1 -0.6695 -1.9227 0.1808 20 1 -1.4145 -3.7381 1.8199 21 1 1.2940 -3.8811 2.7322 22 1 0.2862 -5.3912 2.6128 23 1 1.7474 -5.7342 0.5104 24 1 -0.7841 -5.6649 0.3479 25 1 -0.3756 -4.3044 -0.7888 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461662.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = -21.173523 kcal Electronic energy + Delta-G solvation = -11184.147400 eV Core-core repulsion = 9162.895855 eV Total energy + Delta-G solvation = -2021.251546 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.89802 -38.06678 -36.50407 -33.25935 -29.40074 -27.55098 -26.45406 -24.32111 -22.30672 -19.65393 -18.22125 -17.43494 -16.62505 -16.21716 -15.86430 -15.43485 -15.00224 -14.50748 -14.04428 -13.32814 -13.02796 -12.92041 -12.58614 -12.19282 -12.07062 -11.87173 -11.38240 -11.11394 -10.91530 -10.30455 -9.83954 -8.32173 -5.97637 1.33691 1.37819 1.48995 1.90033 2.23789 2.98774 3.07392 3.53892 3.70283 3.79937 3.93056 4.10419 4.59766 4.84899 4.88641 4.98252 5.02058 5.10860 5.22407 5.32025 5.43556 5.52182 5.99848 6.44350 7.08730 7.42070 7.98555 8.60319 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.062197 B = 0.015907 C = 0.013739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.078024 B = 1759.760070 C = 2037.471639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.000 4.000 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.271 1.271 7 C -0.358 4.358 8 H 0.072 0.928 9 N -0.455 5.455 10 C 0.148 3.852 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.137 4.137 14 C -0.111 4.111 15 C 0.433 3.567 16 O -0.649 6.649 17 H 0.276 0.724 18 H 0.042 0.958 19 H 0.085 0.915 20 H 0.127 0.873 21 H 0.048 0.952 22 H 0.134 0.866 23 H 0.114 0.886 24 H 0.134 0.866 25 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -4.885 4.772 8.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.090 0.910 9 N -0.173 5.173 10 C 0.026 3.974 11 C -0.149 4.149 12 C -0.148 4.148 13 C -0.159 4.159 14 C -0.149 4.149 15 C 0.224 3.776 16 O -0.539 6.539 17 H 0.086 0.914 18 H 0.061 0.939 19 H 0.103 0.897 20 H 0.145 0.855 21 H 0.067 0.933 22 H 0.152 0.848 23 H 0.132 0.868 24 H 0.152 0.848 25 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.472 -4.713 4.541 8.531 hybrid contribution 0.734 1.067 -0.307 1.330 sum -4.739 -3.646 4.235 7.327 Atomic orbital electron populations 1.70054 1.06596 1.28687 1.47410 1.26045 0.96503 1.02212 0.95405 0.85040 0.78060 0.76563 0.78928 1.19988 1.18754 1.19629 1.19684 0.96029 0.85739 1.47108 0.91048 1.44104 1.15261 1.04977 1.52918 1.21459 0.83060 0.94689 0.98223 1.23021 1.00917 0.92949 0.98027 1.23640 0.96870 1.01153 0.93171 1.23595 0.96881 0.95476 0.99928 1.23110 0.93221 1.00939 0.97612 1.21189 0.87043 0.85858 0.83534 1.90430 1.23909 1.87214 1.52309 0.91353 0.93914 0.89699 0.85460 0.93334 0.84830 0.86821 0.84775 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.36 10.12 21.66 0.22 -47.14 15 2 C 0.00 0.02 5.25 84.93 0.45 0.47 15 3 Si 0.99 43.31 29.59 68.60 2.03 45.34 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 7 C -0.36 -21.53 9.53 84.04 0.80 -20.73 15 8 H 0.07 4.61 7.35 -2.91 -0.02 4.59 15 9 N -0.46 -25.13 3.02 -632.39 -1.91 -27.04 15 10 C 0.15 6.83 4.61 86.44 0.40 7.23 15 11 C -0.13 -4.30 4.80 -10.19 -0.05 -4.34 15 12 C -0.11 -3.42 7.47 32.40 0.24 -3.18 15 13 C -0.14 -5.25 5.27 -9.36 -0.05 -5.30 15 14 C -0.11 -3.49 7.32 31.35 0.23 -3.26 15 15 C 0.43 23.37 7.03 88.03 0.62 23.99 15 16 O -0.65 -40.76 16.92 -3.07 -0.05 -40.81 15 17 H 0.28 13.63 8.31 -92.70 -0.77 12.86 15 18 H 0.04 2.05 7.86 -2.39 -0.02 2.04 15 19 H 0.09 4.24 6.41 -2.39 -0.02 4.23 15 20 H 0.13 3.21 8.14 -2.38 -0.02 3.19 15 21 H 0.05 1.71 8.10 -2.38 -0.02 1.69 15 22 H 0.13 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.11 3.93 8.14 -2.39 -0.02 3.91 15 24 H 0.13 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.04 1.66 8.09 -2.39 -0.02 1.64 15 Total: -1.00 -71.29 210.94 4.10 -67.19 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.18 Total: 7.59 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 2.64 Total: -5.12 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.69 Total: -74.19 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.05 Total: -40.81 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.29 4.10 -67.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461662.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.019 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds