Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47234 * 2 1 4 4 N 1.30170 * 126.79969 * 89.97722 * 3 2 1 5 5 O 1.20929 * 111.59969 * 180.02562 * 4 3 2 6 6 C 1.34039 * 111.56829 * 359.97438 * 5 4 3 7 7 C 1.35448 * 106.44714 * 0.24601 * 6 5 4 8 8 C 1.50693 * 128.00819 * 179.74107 * 7 6 5 9 9 C 1.50697 * 109.46982 * 265.01960 * 8 7 6 10 10 H 1.08007 * 120.00180 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00161 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00090 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99944 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47795 * 89.99585 * 13 11 9 15 15 H 1.48505 * 109.46991 * 209.99724 * 13 11 9 16 16 H 1.48498 * 109.47158 * 329.99259 * 13 11 9 17 17 H 1.08994 * 109.47432 * 59.99791 * 1 2 3 18 18 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.46685 * 299.99689 * 1 2 3 20 20 H 1.09001 * 109.46550 * 239.99778 * 2 1 3 21 21 H 1.09001 * 109.47140 * 120.00453 * 2 1 3 22 22 H 1.08002 * 126.77290 * 179.97438 * 6 5 4 23 23 H 1.09001 * 109.47457 * 25.01950 * 8 7 6 24 24 H 1.08999 * 109.47526 * 145.01709 * 8 7 6 25 25 H 0.96999 * 119.99991 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1561 1.0423 5 8 2.6806 3.2565 0.7253 6 6 2.7308 3.3964 -0.6069 7 6 2.3102 2.2209 -1.1321 8 6 2.1722 1.8508 -2.5863 9 6 0.7529 2.0898 -3.0330 10 1 0.0236 2.4712 -2.3335 11 6 0.3850 1.8207 -4.3343 12 7 1.2729 1.3559 -5.1859 13 14 -1.3741 2.1177 -4.8880 14 1 -1.5043 3.5053 -5.4004 15 1 -1.7225 1.1573 -5.9658 16 1 -2.2940 1.9262 -3.7381 17 1 -0.3634 0.5138 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8933 -0.5139 -0.8900 21 1 1.8934 -0.5139 0.8899 22 1 3.0408 4.2748 -1.1535 23 1 2.8487 2.4628 -3.1828 24 1 2.4224 0.7982 -2.7188 25 1 1.0142 1.1669 -6.1015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533706.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = 36.737519 kcal Electronic energy + Delta-G solvation = -10692.366789 eV Core-core repulsion = 8673.626455 eV Total energy + Delta-G solvation = -2018.740334 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.10063 -35.28327 -33.23340 -31.61764 -30.36844 -27.84084 -23.87892 -23.55154 -20.36901 -20.08685 -16.88798 -16.65095 -16.18186 -14.65899 -14.22564 -13.72725 -12.83805 -12.46717 -12.25313 -11.97677 -11.59286 -11.04915 -10.98170 -10.78334 -10.57489 -10.12039 -9.91930 -9.63741 -9.08065 -8.48558 -8.31575 -6.11106 -4.14627 2.28017 3.11150 3.26224 3.33325 3.37642 4.06727 4.39222 4.89604 5.23137 5.31372 5.82817 5.83622 5.85145 6.08492 6.26263 6.33226 6.46524 6.67441 6.82391 7.00307 7.44463 7.56786 7.84672 8.23811 8.89356 9.01624 9.49465 10.99006 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.046512 B = 0.013324 C = 0.011975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.852336 B = 2100.949657 C = 2337.719175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C 0.016 3.984 4 N -0.386 5.386 5 O 0.079 5.921 6 C -0.102 4.102 7 C -0.142 4.142 8 C 0.084 3.916 9 C -0.511 4.511 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 H 0.076 0.924 18 H 0.055 0.945 19 H 0.046 0.954 20 H 0.087 0.913 21 H 0.066 0.934 22 H 0.208 0.792 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 0.111 6.136 6.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.142 4.142 4 N -0.092 5.092 5 O 0.014 5.986 6 C -0.182 4.182 7 C -0.146 4.146 8 C 0.047 3.953 9 C -0.549 4.549 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 H 0.095 0.905 18 H 0.074 0.926 19 H 0.065 0.935 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.224 0.776 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.504 -0.140 7.270 7.289 hybrid contribution -0.953 0.227 -1.344 1.663 sum -0.449 0.087 5.926 5.944 Atomic orbital electron populations 1.21721 0.94284 1.01511 1.02890 1.19787 0.96451 0.88581 1.02600 1.23508 1.02522 0.99250 0.88967 1.73671 1.17613 0.93191 1.24775 1.84660 1.63484 1.26666 1.23780 1.25610 1.07933 1.01846 0.82794 1.22164 0.99875 0.92597 0.99946 1.17694 0.97706 0.97583 0.82329 1.21005 0.94548 1.43902 0.95486 0.92561 1.24982 0.97491 0.95058 0.96612 1.69943 1.33882 1.44500 1.04849 0.86560 0.84737 0.78108 0.78477 1.20566 1.21092 1.19793 0.90522 0.92557 0.93508 0.89500 0.91583 0.77563 0.95035 0.94846 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.90 37.16 0.37 -2.16 15 2 C -0.04 -0.65 6.44 -27.88 -0.18 -0.83 15 3 C 0.02 0.33 6.58 -82.10 -0.54 -0.21 15 4 N -0.39 -7.92 12.07 33.42 0.40 -7.51 15 5 O 0.08 1.53 11.20 17.18 0.19 1.72 15 6 C -0.10 -1.92 12.26 29.74 0.36 -1.56 15 7 C -0.14 -3.10 5.51 -104.43 -0.58 -3.68 15 8 C 0.08 2.09 5.47 -29.04 -0.16 1.94 15 9 C -0.51 -13.77 9.03 -34.44 -0.31 -14.08 15 10 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -25.51 13.29 55.43 0.74 -24.78 15 13 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 15 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 17 H 0.08 1.53 8.07 -51.93 -0.42 1.11 15 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.09 1.57 7.81 -51.93 -0.41 1.17 15 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.21 3.14 8.06 -52.49 -0.42 2.72 15 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.03 0.87 7.81 -51.93 -0.41 0.46 15 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 228.43 15.07 3.44 3.44 Total: -1.00 -29.07 228.43 -4.26 -33.33 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.89 Total: -3.14 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.13 Total: -19.02 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 1.14 Total: -32.29 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.07 -4.26 -33.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533706.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.072 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds