Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 C 1.34327 * 126.16306 * 84.99396 * 13 3 2 15 15 O 1.34760 * 107.10918 * 180.02562 * 14 13 3 16 16 C 1.33967 * 107.75296 * 0.02562 * 15 14 13 17 17 N 1.30253 * 108.76265 * 359.72720 * 16 15 14 18 18 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 19 19 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 21 21 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 22 22 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 24 24 H 1.07997 * 126.44959 * 359.97438 * 14 13 3 25 25 H 1.07999 * 125.61416 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 6 1.6414 2.1163 1.2877 14 6 2.3126 2.0646 2.4501 15 8 1.6181 2.7984 3.3419 16 6 0.5378 3.2855 2.7171 17 7 0.5521 2.8811 1.4790 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 3.8295 -0.0694 -2.9455 24 1 3.2349 1.5341 2.6355 25 1 -0.2175 3.9143 3.1648 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260557439.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = 8.243744 kcal Electronic energy + Delta-G solvation = -10811.967876 eV Core-core repulsion = 8791.991959 eV Total energy + Delta-G solvation = -2019.975917 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.48277 -35.57285 -33.36292 -31.50196 -29.43784 -26.77627 -23.48617 -21.92409 -21.39227 -19.30030 -16.72132 -16.24608 -15.70074 -14.63738 -14.17056 -13.73968 -13.05539 -12.58950 -12.25003 -11.34535 -11.17252 -10.86766 -10.74404 -10.43609 -10.00055 -9.87261 -9.74824 -9.51030 -8.90362 -8.38269 -7.88495 -6.04826 -4.12401 2.29706 3.29227 3.34463 3.36182 3.63300 3.63629 4.38139 4.93277 5.26110 6.04458 6.05594 6.32742 6.39300 6.53047 6.62101 6.70506 6.98840 7.16644 7.30462 7.41704 7.68227 7.90008 8.06644 8.29838 8.62593 8.89328 9.52041 11.01057 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.047907 B = 0.014614 C = 0.011981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.326026 B = 1915.540130 C = 2336.538512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.118 3.882 4 H 0.044 0.956 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.033 3.967 14 C -0.092 4.092 15 O -0.223 6.223 16 C 0.132 3.868 17 N -0.487 5.487 18 H 0.045 0.955 19 H 0.030 0.970 20 H 0.037 0.963 21 H 0.099 0.901 22 H 0.031 0.969 23 H 0.263 0.737 24 H 0.211 0.789 25 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 1.614 6.792 7.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.099 3.901 4 H 0.062 0.938 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.086 4.086 14 C -0.160 4.160 15 O -0.109 6.109 16 C -0.094 4.094 17 N -0.217 5.217 18 H 0.064 0.936 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.117 0.883 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.228 0.772 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.029 1.684 6.218 7.119 hybrid contribution 1.446 -0.106 0.401 1.504 sum -1.583 1.578 6.619 6.986 Atomic orbital electron populations 1.21800 0.98971 0.98762 1.00545 1.21569 0.91982 0.98856 1.02405 1.17314 0.95277 0.91099 0.86379 0.93830 1.21111 0.90452 1.38068 1.05997 0.92468 1.24937 0.98254 0.95050 0.95538 1.69870 1.35012 1.38001 1.09482 0.86608 0.85422 0.78280 0.77414 1.20203 1.21176 1.20258 1.22677 0.89920 0.97166 0.98792 1.24830 1.00635 1.01793 0.88763 1.84381 1.32271 1.52486 1.41780 1.27833 0.91037 1.01835 0.88659 1.70411 1.22334 1.12841 1.16108 0.93571 0.95070 0.94388 0.88284 0.95034 0.92720 0.77227 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.73 37.16 0.36 -2.70 15 2 C -0.11 -2.66 5.23 -26.73 -0.14 -2.80 15 3 C 0.12 3.04 2.23 -92.92 -0.21 2.83 15 4 H 0.04 1.25 8.14 -51.93 -0.42 0.82 15 5 C -0.52 -13.92 8.25 -34.44 -0.28 -14.21 15 6 H 0.06 1.49 6.83 -52.49 -0.36 1.13 15 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 15 8 N -0.89 -24.83 11.28 55.43 0.63 -24.20 15 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 13 C 0.03 0.77 5.12 -82.82 -0.42 0.34 15 14 C -0.09 -1.86 11.06 29.35 0.32 -1.54 15 15 O -0.22 -4.05 10.78 5.34 0.06 -4.00 15 16 C 0.13 2.24 13.23 52.09 0.69 2.93 15 17 N -0.49 -10.35 10.91 -11.18 -0.12 -10.47 15 18 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 20 H 0.04 0.80 7.06 -51.93 -0.37 0.43 15 21 H 0.10 2.62 5.94 -51.93 -0.31 2.31 15 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 24 H 0.21 3.90 7.66 -52.49 -0.40 3.50 15 25 H 0.24 2.56 8.06 -52.49 -0.42 2.14 15 LS Contribution 220.39 15.07 3.32 3.32 Total: -1.00 -29.55 220.39 -3.60 -33.14 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.68 Total: -0.07 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 0.23 Total: -13.50 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.50 Total: -34.67 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.06 Total: -4.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.55 -3.60 -33.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557439.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.387 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds