Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 H 1.09000 * 109.47246 * 305.60153 * 3 2 1 5 5 C 1.50705 * 109.46938 * 65.59842 * 3 2 1 6 6 H 1.08002 * 119.99862 * 28.14125 * 5 3 2 7 7 C 1.37874 * 119.99740 * 208.14159 * 5 3 2 8 8 N 1.31516 * 120.00290 * 5.94580 * 7 5 3 9 9 Si 1.86806 * 119.99795 * 185.95110 * 7 5 3 10 10 H 1.48500 * 109.46986 * 59.99642 * 9 7 5 11 11 H 1.48496 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46870 * 299.99882 * 9 7 5 13 13 C 1.50696 * 109.47151 * 185.59697 * 3 2 1 14 14 C 1.34331 * 126.16748 * 275.00163 * 13 3 2 15 15 O 1.34756 * 107.11248 * 180.02562 * 14 13 3 16 16 C 1.33971 * 107.75635 * 0.02562 * 15 14 13 17 17 N 1.30254 * 108.76203 * 0.02562 * 16 15 14 18 18 H 1.09002 * 109.46983 * 173.96911 * 1 2 3 19 19 H 1.08999 * 109.46823 * 293.96299 * 1 2 3 20 20 H 1.08991 * 109.47276 * 53.97041 * 1 2 3 21 21 H 1.09000 * 109.47178 * 240.00356 * 2 1 3 22 22 H 1.08999 * 109.47470 * 119.99869 * 2 1 3 23 23 H 0.97004 * 120.00048 * 180.02562 * 8 7 5 24 24 H 1.07991 * 126.44076 * 0.03717 * 14 13 3 25 25 H 1.08003 * 125.61740 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 1.6540 2.1117 1.2940 6 1 1.5282 1.5223 2.1902 7 6 1.4614 3.4764 1.3335 8 7 1.4993 4.1784 0.2221 9 14 1.1469 4.3283 2.9660 10 1 2.3011 4.1022 3.8727 11 1 0.9745 5.7856 2.7388 12 1 -0.0842 3.7741 3.5844 13 6 3.5405 1.4448 -0.1386 14 6 4.4291 1.3164 0.8606 15 8 5.6572 1.3715 0.3086 16 6 5.5045 1.5325 -1.0126 17 7 4.2315 1.5778 -1.2847 18 1 -0.3633 -1.0220 -0.1080 19 1 -0.3633 0.4174 0.9391 20 1 -0.3633 0.6044 -0.8310 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.3642 5.1386 0.2500 24 1 4.2020 1.1922 1.9090 25 1 6.3050 1.6123 -1.7332 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260557447.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 5.102395 kcal Electronic energy + Delta-G solvation = -10811.990175 eV Core-core repulsion = 8791.878038 eV Total energy + Delta-G solvation = -2020.112136 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.23814 -35.43704 -33.19521 -31.80100 -29.28097 -26.42153 -23.92616 -21.67417 -21.07595 -19.35893 -16.79724 -16.16210 -15.50152 -14.52574 -14.03761 -13.61538 -13.16423 -12.58755 -12.35233 -11.44178 -11.03892 -10.97158 -10.54706 -10.42228 -10.14596 -10.06542 -9.55047 -9.24636 -9.05962 -8.48325 -7.66243 -6.05883 -4.12418 2.51526 3.28326 3.34598 3.35532 3.83057 3.88313 4.38898 5.04821 5.33363 6.07423 6.16537 6.30336 6.32933 6.52562 6.77606 6.79366 6.93750 6.99806 7.21592 7.25770 7.63328 7.77297 7.90432 8.29175 8.85141 8.98366 9.53390 11.02773 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.017780 C = 0.013734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.066608 B = 1574.384728 C = 2038.238215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.104 3.896 4 H 0.070 0.930 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.043 3.957 14 C -0.092 4.092 15 O -0.226 6.226 16 C 0.126 3.874 17 N -0.486 5.486 18 H 0.029 0.971 19 H 0.060 0.940 20 H 0.047 0.953 21 H 0.033 0.967 22 H 0.043 0.957 23 H 0.262 0.738 24 H 0.207 0.793 25 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -4.825 0.642 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.084 3.916 4 H 0.088 0.912 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.077 4.077 14 C -0.161 4.161 15 O -0.113 6.113 16 C -0.100 4.100 17 N -0.217 5.217 18 H 0.048 0.952 19 H 0.079 0.921 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.224 0.776 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.513 -4.553 -0.016 5.751 hybrid contribution 0.283 0.686 1.504 1.677 sum 3.796 -3.867 1.488 5.619 Atomic orbital electron populations 1.21583 0.96381 0.98552 1.02455 1.21470 0.95556 0.98208 0.98825 1.17440 0.82607 0.91873 0.99647 0.91151 1.20932 1.47874 0.92097 0.94677 0.92349 1.25029 0.94499 0.97789 0.96074 1.69964 1.48258 1.07083 1.26210 0.86733 0.78859 0.78597 0.84311 1.20190 1.21303 1.20040 1.22982 1.00306 0.98401 0.86028 1.24682 0.79973 1.10763 1.00638 1.84347 1.33804 1.70129 1.23004 1.27757 0.96238 1.04060 0.81936 1.70396 1.03135 1.16872 1.31264 0.95186 0.92063 0.93373 0.94772 0.93799 0.92766 0.77635 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.63 37.16 0.36 -2.25 15 2 C -0.10 -2.20 5.37 -26.73 -0.14 -2.35 15 3 C 0.10 2.62 2.28 -92.92 -0.21 2.40 15 4 H 0.07 2.03 7.43 -51.93 -0.39 1.64 15 5 C -0.52 -13.63 6.73 -34.44 -0.23 -13.86 15 6 H 0.06 1.48 7.82 -52.49 -0.41 1.07 15 7 C 0.07 1.91 5.45 -17.82 -0.10 1.82 15 8 N -0.88 -25.66 12.87 55.43 0.71 -24.95 15 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 13 C 0.04 1.03 6.03 -82.81 -0.50 0.53 15 14 C -0.09 -2.02 11.37 29.35 0.33 -1.68 15 15 O -0.23 -4.53 10.78 5.34 0.06 -4.48 15 16 C 0.13 2.38 13.23 52.09 0.69 3.07 15 17 N -0.49 -11.34 11.29 -11.17 -0.13 -11.46 15 18 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15 19 H 0.06 1.25 7.60 -51.93 -0.39 0.85 15 20 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.03 0.71 8.14 -51.93 -0.42 0.28 15 22 H 0.04 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 24 H 0.21 4.10 7.95 -52.49 -0.42 3.68 15 25 H 0.23 2.98 8.06 -52.48 -0.42 2.55 15 LS Contribution 225.63 15.07 3.40 3.40 Total: -1.00 -30.48 225.63 -3.64 -34.11 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -2.86 Total: -0.17 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 0.20 Total: -12.32 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.59 Total: -36.41 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.06 Total: -4.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.48 -3.64 -34.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557447.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.214 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds