Wall clock time and date at job start Mon Mar 30 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.34036 * 126.77757 * 270.03060 * 3 2 1 5 5 N 1.20919 * 111.56647 * 179.97438 * 4 3 2 6 6 C 1.30174 * 111.60644 * 359.97438 * 5 4 3 7 7 C 1.35450 * 126.77539 * 89.71109 * 3 2 1 8 8 C 1.50702 * 128.00534 * 0.02562 * 7 3 2 9 9 C 1.50707 * 109.47030 * 85.00260 * 8 7 3 10 10 H 1.07995 * 119.99487 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99867 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00310 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99813 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46864 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47336 * 119.99893 * 13 11 9 16 16 H 1.48504 * 109.47013 * 239.99898 * 13 11 9 17 17 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 20 20 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 21 21 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 22 22 H 1.07997 * 126.80455 * 180.02562 * 6 5 4 23 23 H 1.09001 * 109.47088 * 204.99957 * 8 7 3 24 24 H 1.09003 * 109.47179 * 325.00323 * 8 7 3 25 25 H 0.96996 * 120.00186 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2993 2.1776 -1.0736 5 7 2.6880 3.2778 -0.7563 6 6 2.7361 3.4146 0.5373 7 6 2.2975 2.1872 1.0849 8 6 2.1592 1.8165 2.5391 9 6 3.4082 1.1089 2.9981 10 1 4.2205 0.9438 2.3058 11 6 3.5132 0.6714 4.3013 12 7 2.5238 0.8720 5.1441 13 14 5.0616 -0.2050 4.8704 14 1 6.0184 -0.3041 3.7391 15 1 5.6841 0.5603 5.9803 16 1 4.7128 -1.5687 5.3440 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8934 -0.5139 0.8899 22 1 3.0459 4.2930 1.0840 23 1 2.0146 2.7196 3.1321 24 1 1.3006 1.1571 2.6659 25 1 2.5978 0.5646 6.0610 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260561925.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:54 Heat of formation + Delta-G solvation = 37.508345 kcal Electronic energy + Delta-G solvation = -10645.452265 eV Core-core repulsion = 8626.745356 eV Total energy + Delta-G solvation = -2018.706909 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.10609 -34.95597 -33.37577 -32.49566 -29.95249 -27.68792 -23.86082 -23.32722 -21.42902 -19.58236 -16.95734 -16.32345 -16.18023 -14.65563 -14.22614 -13.86086 -12.96479 -12.46762 -12.17104 -12.03720 -11.78096 -11.08964 -11.03011 -10.72180 -10.70430 -10.18031 -9.93386 -9.70874 -9.29009 -8.48612 -8.12031 -6.10771 -4.14710 2.24487 3.14706 3.25559 3.34084 3.39466 3.87315 4.39711 5.12546 5.24221 5.28648 5.54253 5.65854 5.82509 5.97356 6.19771 6.35843 6.38877 6.55995 6.64299 7.00844 7.46130 7.58592 7.85264 8.24528 8.90199 8.99104 9.49839 10.99151 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.046395 B = 0.012625 C = 0.011472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.366759 B = 2217.335873 C = 2440.143383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C -0.065 4.065 4 O 0.080 5.920 5 N -0.388 5.388 6 C -0.016 4.016 7 C -0.144 4.144 8 C 0.085 3.915 9 C -0.514 4.514 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 H 0.051 0.949 18 H 0.061 0.939 19 H 0.062 0.938 20 H 0.074 0.926 21 H 0.105 0.895 22 H 0.182 0.818 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -1.413 -6.792 7.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.128 4.128 4 O 0.014 5.986 5 N -0.093 5.093 6 C -0.193 4.193 7 C -0.148 4.148 8 C 0.047 3.953 9 C -0.552 4.552 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 H 0.070 0.930 18 H 0.080 0.920 19 H 0.081 0.919 20 H 0.092 0.908 21 H 0.123 0.877 22 H 0.199 0.801 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.102 -0.632 -7.647 7.956 hybrid contribution 0.841 -0.601 1.272 1.639 sum -1.261 -1.233 -6.375 6.615 Atomic orbital electron populations 1.21746 0.94543 1.01832 1.02262 1.19970 0.95769 0.87154 1.04285 1.24117 1.06094 0.96909 0.85638 1.84630 1.62362 1.17784 1.33786 1.73727 1.18057 1.00302 1.17240 1.24915 1.03442 1.00909 0.90066 1.22006 1.00909 0.92011 0.99870 1.17707 0.97857 0.97251 0.82449 1.21088 1.01383 1.37073 0.95636 0.92526 1.24991 0.96525 0.96046 0.96625 1.69953 1.31451 1.46695 1.05057 0.86492 0.83202 0.79369 0.78757 1.19699 1.20894 1.20846 0.92960 0.91995 0.91927 0.90764 0.87715 0.80128 0.95044 0.94764 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 37.16 0.37 -1.68 15 2 C -0.03 -0.54 6.35 -27.88 -0.18 -0.72 15 3 C -0.06 -1.28 6.74 -35.30 -0.24 -1.52 15 4 O 0.08 1.59 11.20 17.19 0.19 1.78 15 5 N -0.39 -7.99 12.07 30.35 0.37 -7.62 15 6 C -0.02 -0.33 12.16 -17.06 -0.21 -0.53 15 7 C -0.14 -3.18 5.51 -104.42 -0.58 -3.75 15 8 C 0.08 2.12 5.31 -29.03 -0.15 1.97 15 9 C -0.51 -13.99 9.09 -34.44 -0.31 -14.31 15 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -25.59 13.29 55.43 0.74 -24.85 15 13 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 15 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 19 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 21 H 0.10 1.85 8.06 -51.93 -0.42 1.43 15 22 H 0.18 3.27 8.06 -52.49 -0.42 2.85 15 23 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 228.96 15.07 3.45 3.45 Total: -1.00 -29.20 228.96 -4.59 -33.79 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -2.92 Total: -3.58 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.40 Total: -19.00 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 1.10 Total: -32.47 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.19 Total: 1.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.20 -4.59 -33.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561925.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.299 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds