Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.34036 * 126.77757 * 270.03060 * 3 2 1 5 5 N 1.20919 * 111.56647 * 179.97438 * 4 3 2 6 6 C 1.30174 * 111.60644 * 359.97438 * 5 4 3 7 7 C 1.35450 * 126.77539 * 89.71109 * 3 2 1 8 8 C 1.50702 * 128.00534 * 0.02562 * 7 3 2 9 9 C 1.50707 * 109.47030 * 85.00260 * 8 7 3 10 10 H 1.07995 * 119.99487 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99867 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00310 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99813 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46864 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47336 * 119.99893 * 13 11 9 16 16 H 1.48504 * 109.47013 * 239.99898 * 13 11 9 17 17 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 20 20 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 21 21 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 22 22 H 1.07997 * 126.80455 * 180.02562 * 6 5 4 23 23 H 1.09001 * 109.47088 * 204.99957 * 8 7 3 24 24 H 1.09003 * 109.47179 * 325.00323 * 8 7 3 25 25 H 0.96996 * 120.00186 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2993 2.1776 -1.0736 5 7 2.6880 3.2778 -0.7563 6 6 2.7361 3.4146 0.5373 7 6 2.2975 2.1872 1.0849 8 6 2.1592 1.8165 2.5391 9 6 3.4082 1.1089 2.9981 10 1 4.2205 0.9438 2.3058 11 6 3.5132 0.6714 4.3013 12 7 2.5238 0.8720 5.1441 13 14 5.0616 -0.2050 4.8704 14 1 6.0184 -0.3041 3.7391 15 1 5.6841 0.5603 5.9803 16 1 4.7128 -1.5687 5.3440 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8934 -0.5139 0.8899 22 1 3.0459 4.2930 1.0840 23 1 2.0146 2.7196 3.1321 24 1 1.3006 1.1571 2.6659 25 1 2.5978 0.5646 6.0610 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260561925.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = 20.615325 kcal Electronic energy + Delta-G solvation = -10646.184801 eV Core-core repulsion = 8626.745356 eV Total energy + Delta-G solvation = -2019.439445 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.73714 -36.64626 -34.96679 -34.38918 -31.58192 -29.53535 -25.74286 -24.77936 -23.09324 -21.22893 -18.73870 -18.17159 -17.88192 -16.57653 -15.68571 -15.36821 -14.46396 -14.33590 -13.96522 -13.64110 -13.31296 -12.85485 -12.68462 -12.31254 -12.26048 -11.81983 -11.72415 -11.67471 -11.01856 -10.59493 -9.82296 -8.20699 -6.32610 0.64364 1.40326 1.40836 1.48529 1.56107 2.30502 2.42572 3.11409 3.52057 3.84619 4.21779 4.31445 4.43362 4.56615 4.75180 4.96755 5.07495 5.21032 5.27949 5.32985 5.46357 5.57621 5.73721 6.16396 6.78212 7.36169 7.37493 8.89309 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.046395 B = 0.012625 C = 0.011472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.366759 B = 2217.335873 C = 2440.143383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.044 4.044 4 O 0.086 5.914 5 N -0.394 5.394 6 C -0.016 4.016 7 C -0.183 4.183 8 C 0.099 3.901 9 C -0.528 4.528 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.274 1.274 17 H 0.064 0.936 18 H 0.089 0.911 19 H 0.040 0.960 20 H 0.107 0.893 21 H 0.087 0.913 22 H 0.199 0.801 23 H 0.008 0.992 24 H 0.019 0.981 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -2.324 -7.620 8.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.108 4.108 4 O 0.021 5.979 5 N -0.100 5.100 6 C -0.194 4.194 7 C -0.187 4.187 8 C 0.061 3.939 9 C -0.566 4.566 10 H 0.069 0.931 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.786 3.214 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.199 1.199 17 H 0.084 0.916 18 H 0.108 0.892 19 H 0.060 0.940 20 H 0.125 0.875 21 H 0.106 0.894 22 H 0.216 0.784 23 H 0.027 0.973 24 H 0.038 0.962 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.644 -1.541 -8.493 8.787 hybrid contribution 0.660 -0.315 1.492 1.661 sum -0.984 -1.856 -7.001 7.309 Atomic orbital electron populations 1.21720 0.92660 1.03599 1.01839 1.20174 0.97292 0.84967 1.05006 1.24659 1.03490 0.97775 0.84830 1.84630 1.62045 1.17640 1.33545 1.73715 1.18607 1.00681 1.16984 1.25180 1.02907 1.01125 0.90158 1.21787 1.04158 0.93727 0.98982 1.17360 0.96638 0.95613 0.84273 1.21328 1.01916 1.37405 0.95915 0.93139 1.25807 0.99587 0.96677 0.96681 1.70055 1.33356 1.47605 1.05502 0.85454 0.79315 0.78415 0.78219 1.19299 1.20448 1.19891 0.91648 0.89194 0.94048 0.87494 0.89434 0.78369 0.97334 0.96237 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.89 71.98 0.71 -2.94 15 2 C -0.04 -1.11 6.35 29.85 0.19 -0.92 15 3 C -0.04 -1.69 6.74 25.04 0.17 -1.52 15 4 O 0.09 3.26 11.20 71.67 0.80 4.06 15 5 N -0.39 -15.69 12.07 -59.27 -0.72 -16.41 15 6 C -0.02 -0.67 12.16 85.71 1.04 0.38 15 7 C -0.18 -8.04 5.51 -19.74 -0.11 -8.15 15 8 C 0.10 5.05 5.31 29.10 0.15 5.21 15 9 C -0.53 -28.97 9.09 25.60 0.23 -28.74 15 10 H 0.05 2.78 7.74 -2.91 -0.02 2.75 15 11 C 0.01 0.62 5.46 84.65 0.46 1.08 15 12 N -0.93 -53.44 13.29 21.45 0.28 -53.16 15 13 Si 0.96 42.86 29.54 68.60 2.03 44.89 15 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 17 H 0.06 1.53 8.14 -2.38 -0.02 1.51 15 18 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 19 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 21 H 0.09 3.02 8.06 -2.39 -0.02 3.00 15 22 H 0.20 7.07 8.06 -2.91 -0.02 7.05 15 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 25 H 0.27 14.41 8.31 -92.71 -0.77 13.64 15 Total: -1.00 -61.17 228.96 6.42 -54.74 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.17 Total: 1.47 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.85 Total: -35.60 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.43 Total: -69.57 kcal Atomic # 8 Polarization: 3.26 SS G_CDS: 0.80 Total: 4.06 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.17 6.42 -54.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561925.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.360 kcal (2) G-P(sol) polarization free energy of solvation -61.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds