Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.34509 * 125.79289 * 99.71473 * 13 10 9 15 15 C 1.41376 * 106.84403 * 179.89000 * 14 13 10 16 16 C 1.34520 * 106.83828 * 0.36909 * 15 14 13 17 17 O 1.34301 * 125.78540 * 280.02063 * 13 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 22 22 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 23 23 H 1.08002 * 126.57766 * 0.02562 * 14 13 10 24 24 H 1.08000 * 126.58497 * 180.16687 * 15 14 13 25 25 H 1.07996 * 125.78845 * 179.75195 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.2140 -2.8521 1.2749 15 6 7.5852 -2.7663 0.9413 16 6 7.6499 -2.4969 -0.3751 17 8 6.3977 -2.4204 -0.8546 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 2.6347 -3.3652 -1.3250 22 1 4.0322 -2.8162 -2.0400 23 1 5.8008 -3.0532 2.2522 24 1 8.4204 -2.8898 1.6147 25 1 8.5552 -2.3643 -0.9488 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564525.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -17.881891 kcal Electronic energy + Delta-G solvation = -10579.104118 eV Core-core repulsion = 8557.995308 eV Total energy + Delta-G solvation = -2021.108810 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.39178 -37.41511 -34.53332 -33.80028 -30.57815 -30.23496 -25.99668 -22.96468 -22.56198 -20.94740 -19.27959 -18.02363 -16.94880 -16.64900 -16.15524 -15.65812 -15.05187 -14.40466 -14.15389 -13.65013 -13.52200 -13.30375 -12.98776 -12.44307 -12.25794 -11.90093 -11.45655 -10.84246 -10.76378 -9.72478 -9.19580 -8.34864 -6.39575 0.91685 1.30108 1.32830 1.43675 1.79126 2.22090 2.30084 2.99699 3.67367 4.02839 4.21103 4.26026 4.49481 4.57914 4.93723 5.03633 5.08169 5.19893 5.31122 5.54442 5.70225 6.14228 6.18778 6.36730 6.58357 6.67106 7.25807 8.80418 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.057396 B = 0.011858 C = 0.010793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.724805 B = 2360.674071 C = 2593.610226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.528 4.528 8 H 0.050 0.950 9 C -0.032 4.032 10 C 0.183 3.817 11 H 0.096 0.904 12 N -0.832 5.832 13 C -0.007 4.007 14 C -0.232 4.232 15 C -0.220 4.220 16 C -0.054 4.054 17 O -0.190 6.190 18 H 0.268 0.732 19 H 0.014 0.986 20 H 0.019 0.981 21 H 0.350 0.650 22 H 0.339 0.661 23 H 0.153 0.847 24 H 0.174 0.826 25 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.388 -2.672 0.046 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.566 4.566 8 H 0.068 0.932 9 C -0.072 4.072 10 C 0.071 3.929 11 H 0.114 0.886 12 N -0.361 5.361 13 C -0.058 4.058 14 C -0.251 4.251 15 C -0.239 4.239 16 C -0.121 4.121 17 O -0.086 6.086 18 H 0.077 0.923 19 H 0.032 0.968 20 H 0.037 0.963 21 H 0.164 0.836 22 H 0.151 0.849 23 H 0.171 0.829 24 H 0.192 0.808 25 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 14.535 -3.152 0.038 14.873 hybrid contribution -0.604 1.673 0.057 1.780 sum 13.931 -1.478 0.095 14.009 Atomic orbital electron populations 1.70027 1.07923 1.28187 1.51919 1.25827 0.95467 1.02936 0.94068 0.85789 0.79323 0.79269 0.79040 1.19387 1.20672 1.18103 1.21251 0.90689 0.93723 1.50962 0.93201 1.20251 0.95245 0.94869 0.96790 1.19788 0.84091 0.94174 0.94812 0.88571 1.59151 1.17373 1.56091 1.03456 1.22708 0.92017 1.04130 0.86932 1.21857 0.94426 1.09562 0.99284 1.22116 0.96988 1.08052 0.96700 1.24849 0.86027 1.05500 0.95712 1.83984 1.16579 1.69905 1.38178 0.92341 0.96797 0.96294 0.83556 0.84940 0.82887 0.80842 0.74414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.96 21.45 0.30 -57.10 15 2 C 0.02 0.87 5.47 84.66 0.46 1.34 15 3 Si 0.94 44.27 27.47 68.60 1.88 46.16 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.26 -11.62 6.54 99.48 0.65 -10.97 15 7 C -0.53 -29.20 9.10 25.60 0.23 -28.97 15 8 H 0.05 2.95 7.39 -2.91 -0.02 2.93 15 9 C -0.03 -1.53 3.67 29.85 0.11 -1.42 15 10 C 0.18 7.44 3.21 44.17 0.14 7.58 15 11 H 0.10 3.94 8.13 -2.38 -0.02 3.92 15 12 N -0.83 -31.86 9.18 -171.80 -1.58 -33.44 15 13 C -0.01 -0.26 6.14 24.83 0.15 -0.11 15 14 C -0.23 -7.50 10.80 22.19 0.24 -7.26 15 15 C -0.22 -5.75 10.91 22.19 0.24 -5.51 15 16 C -0.05 -1.39 12.09 66.97 0.81 -0.58 15 17 O -0.19 -6.52 10.53 -2.46 -0.03 -6.54 15 18 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 19 H 0.01 0.65 7.58 -2.38 -0.02 0.63 15 20 H 0.02 0.90 7.19 -2.39 -0.02 0.88 15 21 H 0.35 13.93 7.90 -89.70 -0.71 13.23 15 22 H 0.34 12.48 8.89 -89.69 -0.80 11.68 15 23 H 0.15 4.50 8.06 -2.91 -0.02 4.48 15 24 H 0.17 3.30 8.06 -2.91 -0.02 3.28 15 25 H 0.24 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -64.01 222.85 2.61 -61.39 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.36 Total: 24.46 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.39 Total: -34.93 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.28 Total: -90.54 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.03 Total: -6.54 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -64.01 2.61 -61.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564525.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.511 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds