Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21300 * 120.00210 * 2 1 4 4 C 1.46718 * 119.99983 * 179.97438 * 2 1 3 5 5 C 1.36820 * 126.63566 * 180.33923 * 4 2 1 6 6 C 1.47303 * 103.11061 * 180.10266 * 5 4 2 7 7 C 1.41750 * 127.36252 * 179.85919 * 6 5 4 8 8 H 1.08002 * 119.99783 * 359.69910 * 7 6 5 9 9 C 1.40024 * 119.99734 * 179.97438 * 7 6 5 10 10 N 1.30724 * 120.00015 * 359.72040 * 9 7 6 11 11 Si 1.86801 * 119.99807 * 179.72094 * 9 7 6 12 12 H 1.48496 * 109.47031 * 59.99920 * 11 9 7 13 13 H 1.48497 * 109.47267 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99897 * 11 9 7 15 15 N 1.32184 * 105.27333 * 359.59162 * 6 5 4 16 16 O 1.20715 * 111.79767 * 0.26549 * 15 6 5 17 17 H 1.08997 * 109.47296 * 270.00496 * 1 2 3 18 18 H 1.09006 * 109.46557 * 30.00590 * 1 2 3 19 19 H 1.08997 * 109.47177 * 150.00195 * 1 2 3 20 20 H 1.07995 * 128.44393 * 359.97438 * 5 4 2 21 21 H 0.97004 * 119.99513 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2405 -1.2706 0.0006 5 6 3.5995 -1.4287 0.0071 6 6 3.7657 -2.8924 0.0017 7 6 4.9821 -3.6200 0.0023 8 1 5.9257 -3.0945 0.0023 9 6 4.9604 -5.0201 -0.0028 10 7 3.8183 -5.6561 -0.0026 11 14 6.5635 -5.9790 -0.0099 12 1 7.3503 -5.6369 1.2021 13 1 6.2696 -7.4346 -0.0140 14 1 7.3449 -5.6279 -1.2228 15 7 2.5379 -3.3822 0.0022 16 8 1.7063 -2.5072 0.0015 17 1 -0.3634 0.0001 1.0276 18 1 -0.3633 0.8900 -0.5140 19 1 -0.3633 -0.8900 -0.5138 20 1 4.3642 -0.6662 0.0126 21 1 3.8033 -6.6260 -0.0066 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260596968.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = 6.142791 kcal Electronic energy + Delta-G solvation = -10267.430940 eV Core-core repulsion = 8111.530824 eV Total energy + Delta-G solvation = -2155.900116 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.63252 -38.63387 -34.02456 -31.52986 -31.02800 -28.97981 -26.25654 -22.54202 -21.39570 -19.49717 -17.04120 -15.97807 -15.91233 -14.95397 -14.51094 -14.25073 -14.04019 -13.00413 -12.23161 -11.99939 -11.88625 -11.30126 -11.27830 -10.90205 -10.28165 -9.72805 -9.59718 -9.14933 -8.51069 -8.14064 -6.64511 -4.59640 1.61450 3.01287 3.09251 3.11857 3.50480 3.91212 3.96402 4.13265 4.95775 5.24654 5.46387 5.66641 5.92967 6.10445 6.27330 6.44199 6.82148 7.04087 7.24662 7.82613 8.22108 8.46019 8.81571 10.26994 10.38062 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.105946 B = 0.010585 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.223156 B = 2644.730921 C = 2893.802883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.446 3.554 3 O -0.468 6.468 4 C -0.165 4.165 5 C -0.200 4.200 6 C 0.153 3.847 7 C -0.446 4.446 8 H 0.088 0.912 9 C 0.069 3.931 10 N -0.773 5.773 11 Si 0.918 3.082 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.265 1.265 15 N -0.381 5.381 16 O 0.062 5.938 17 H 0.096 0.904 18 H 0.083 0.917 19 H 0.090 0.910 20 H 0.151 0.849 21 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 3.946 0.038 4.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.325 3.675 3 O -0.344 6.344 4 C -0.228 4.228 5 C -0.224 4.224 6 C 0.009 3.991 7 C -0.484 4.484 8 H 0.106 0.894 9 C -0.151 4.151 10 N -0.401 5.401 11 Si 0.743 3.257 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.190 1.190 15 N -0.104 5.104 16 O 0.005 5.995 17 H 0.115 0.885 18 H 0.102 0.898 19 H 0.109 0.891 20 H 0.169 0.831 21 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.140 3.169 0.037 4.461 hybrid contribution 1.318 0.043 0.004 1.319 sum -1.822 3.212 0.042 3.693 Atomic orbital electron populations 1.22164 0.93391 1.04763 1.04662 1.21188 0.91098 0.85024 0.70216 1.90526 1.72570 1.32663 1.38644 1.24020 0.94380 0.90029 1.14410 1.24058 0.94401 0.97117 1.06862 1.21687 0.93017 0.87453 0.96991 1.18666 0.90929 0.90606 1.48232 0.89420 1.25871 0.97927 0.98103 0.93214 1.69826 1.26361 1.09690 1.34212 0.86207 0.81548 0.78197 0.79768 1.19002 1.20329 1.19001 1.74696 0.99585 1.07326 1.28798 1.84785 1.35026 1.09498 1.70209 0.88550 0.89805 0.89072 0.83145 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 10.18 36.00 0.37 -2.18 14 2 C 0.45 8.26 7.24 -30.89 -0.22 8.04 14 3 O -0.47 -9.57 17.64 5.54 0.10 -9.47 14 4 C -0.17 -3.72 7.15 -36.67 -0.26 -3.98 14 5 C -0.20 -4.88 11.17 -36.41 -0.41 -5.29 14 6 C 0.15 4.27 6.99 -82.69 -0.58 3.69 14 7 C -0.45 -12.28 9.48 -37.57 -0.36 -12.63 14 8 H 0.09 2.23 7.85 -52.49 -0.41 1.82 14 9 C 0.07 1.83 5.50 -17.35 -0.10 1.73 14 10 N -0.77 -21.53 12.04 55.55 0.67 -20.86 14 11 Si 0.92 19.26 29.56 -169.99 -5.02 14.24 14 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 15 N -0.38 -10.81 10.45 33.37 0.35 -10.46 14 16 O 0.06 1.53 10.93 15.42 0.17 1.70 14 17 H 0.10 1.10 8.14 -51.93 -0.42 0.68 14 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 14 19 H 0.09 1.16 8.01 -51.93 -0.42 0.74 14 20 H 0.15 3.33 8.06 -52.49 -0.42 2.91 14 21 H 0.28 7.06 8.29 -40.82 -0.34 6.72 14 LS Contribution 208.14 15.07 3.14 3.14 Total: -1.00 -30.95 208.14 -3.39 -34.34 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -1.23 Total: -1.99 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.56 Total: -10.62 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 1.02 Total: -31.32 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.27 Total: -7.77 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -30.95 -3.39 -34.34 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260596968.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.478 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds