Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47189 * 270.00311 * 3 2 1 5 5 H 1.48503 * 109.46991 * 30.00528 * 3 2 1 6 6 H 1.48507 * 109.46978 * 150.00222 * 3 2 1 7 7 C 1.37875 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00078 * 180.02562 * 7 2 1 10 10 H 1.09010 * 110.94407 * 304.06973 * 9 7 2 11 11 C 1.54851 * 111.07903 * 180.02562 * 9 7 2 12 12 N 1.47601 * 101.89241 * 218.77433 * 11 9 7 13 13 C 1.28642 * 108.55012 * 14.94713 * 12 11 9 14 14 C 1.50701 * 122.94080 * 180.38248 * 13 12 11 15 15 C 1.53000 * 117.49727 * 335.03057 * 14 13 12 16 16 C 1.53002 * 60.02940 * 107.49982 * 15 14 13 17 17 O 1.34595 * 114.12178 * 0.65992 * 13 12 11 18 18 H 0.97003 * 119.99800 * 359.97438 * 1 2 3 19 19 H 1.09003 * 110.94696 * 100.62425 * 11 9 7 20 20 H 1.09001 * 110.94400 * 336.92240 * 11 9 7 21 21 H 1.08999 * 115.54923 * 189.36256 * 14 13 12 22 22 H 1.09002 * 117.49833 * 215.00087 * 15 14 13 23 23 H 1.09002 * 117.49953 * 0.02562 * 15 14 13 24 24 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 25 25 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.9015 -0.6232 -0.8427 11 6 4.0683 -2.6390 -0.0014 12 7 5.2281 -2.5189 0.9038 13 6 5.1276 -1.4129 1.5531 14 6 6.1493 -0.9608 2.5644 15 6 6.9926 -2.0394 3.2474 16 6 7.6266 -1.1236 2.1984 17 8 4.0273 -0.6977 1.2544 18 1 -0.4850 0.8401 0.0004 19 1 4.3840 -2.9340 -1.0021 20 1 3.3344 -3.3398 0.3966 21 1 5.8704 -0.0896 3.1571 22 1 7.2685 -1.8777 4.2895 23 1 6.8087 -3.0760 2.9649 24 1 8.3198 -0.3596 2.5503 25 1 7.8593 -1.5578 1.2261 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260605687.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = -11.767054 kcal Electronic energy + Delta-G solvation = -10720.513059 eV Core-core repulsion = 8699.669408 eV Total energy + Delta-G solvation = -2020.843650 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.83915 -37.98790 -35.03389 -34.16828 -31.58417 -27.22708 -24.57327 -23.22435 -23.00717 -20.44385 -19.28931 -17.87546 -17.21711 -16.73894 -15.50329 -15.10283 -15.00588 -14.72192 -13.96169 -13.40329 -12.98993 -12.78507 -12.50753 -12.32921 -12.16258 -11.78428 -11.42598 -11.22106 -11.02592 -10.89721 -9.81120 -8.52024 -6.71138 1.17764 1.29280 1.32511 1.54456 2.27336 2.39601 3.00301 3.02979 3.37451 3.89266 3.97482 4.11880 4.15136 4.27193 4.57638 4.78980 4.81315 4.91418 5.07535 5.16594 5.32106 5.33706 5.72162 5.98605 6.41555 6.91906 7.06935 8.61366 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.060524 B = 0.013511 C = 0.011938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.514290 B = 2071.913705 C = 2344.904169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.233 1.233 7 C -0.541 4.541 8 H 0.048 0.952 9 C 0.144 3.856 10 H 0.059 0.941 11 C 0.013 3.987 12 N -0.577 5.577 13 C 0.311 3.689 14 C -0.131 4.131 15 C -0.137 4.137 16 C -0.133 4.133 17 O -0.367 6.367 18 H 0.276 0.724 19 H 0.100 0.900 20 H 0.068 0.932 21 H 0.137 0.863 22 H 0.133 0.867 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 1.288 4.454 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.156 1.156 7 C -0.578 4.578 8 H 0.066 0.934 9 C 0.089 3.911 10 H 0.077 0.923 11 C -0.116 4.116 12 N -0.315 5.315 13 C 0.087 3.913 14 C -0.151 4.151 15 C -0.174 4.174 16 C -0.171 4.171 17 O -0.271 6.271 18 H 0.085 0.915 19 H 0.119 0.881 20 H 0.086 0.914 21 H 0.155 0.845 22 H 0.151 0.849 23 H 0.109 0.891 24 H 0.154 0.846 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.516 0.800 4.396 15.189 hybrid contribution -1.305 0.878 -0.438 1.633 sum 13.211 1.679 3.958 13.893 Atomic orbital electron populations 1.70011 1.08278 1.29237 1.48392 1.26020 0.95623 1.03700 0.91476 0.85813 0.80747 0.77579 0.79501 1.18751 1.20219 1.15625 1.21035 0.88783 0.94247 1.53690 0.93426 1.22022 0.94381 0.92725 0.81962 0.92334 1.23765 0.92080 0.96902 0.98849 1.74475 1.23675 1.18337 1.15006 1.25357 0.86092 0.87169 0.92644 1.20729 0.89888 1.04368 1.00100 1.23123 0.99556 0.95378 0.99358 1.23163 0.90475 1.02796 1.00659 1.87335 1.38555 1.59446 1.41765 0.91497 0.88141 0.91417 0.84497 0.84897 0.89110 0.84650 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.77 13.96 21.45 0.30 -56.47 15 2 C 0.03 2.01 5.47 84.65 0.46 2.47 15 3 Si 0.94 44.40 27.08 68.60 1.86 46.25 15 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.23 -10.73 5.77 99.48 0.57 -10.16 15 7 C -0.54 -31.85 9.40 25.60 0.24 -31.61 15 8 H 0.05 3.06 7.86 -2.91 -0.02 3.03 15 9 C 0.14 7.23 2.89 30.48 0.09 7.32 15 10 H 0.06 2.83 7.41 -2.38 -0.02 2.82 15 11 C 0.01 0.60 7.68 86.80 0.67 1.27 15 12 N -0.58 -24.23 11.24 -449.42 -5.05 -29.29 15 13 C 0.31 12.80 7.44 88.58 0.66 13.46 15 14 C -0.13 -3.86 6.33 -11.52 -0.07 -3.93 15 15 C -0.14 -3.07 10.08 30.60 0.31 -2.76 15 16 C -0.13 -2.89 10.19 30.62 0.31 -2.58 15 17 O -0.37 -18.02 8.71 -78.60 -0.68 -18.70 15 18 H 0.28 15.65 8.31 -92.71 -0.77 14.88 15 19 H 0.10 4.01 8.14 -2.39 -0.02 3.99 15 20 H 0.07 3.20 7.77 -2.39 -0.02 3.18 15 21 H 0.14 3.61 8.14 -2.39 -0.02 3.59 15 22 H 0.13 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.09 2.37 7.94 -2.39 -0.02 2.35 15 24 H 0.14 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -67.68 220.45 0.13 -67.56 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.04 Total: 7.02 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 2.66 Total: -16.37 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.75 Total: -85.76 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.68 Total: -18.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.86 Total: 46.25 kcal Total: -67.68 0.13 -67.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260605687.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.789 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds