Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46559 * 239.99658 * 3 2 1 5 5 H 1.48491 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47115 * 120.00183 * 3 2 1 7 7 C 1.38637 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00149 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.35833 * 116.99892 * 185.05390 * 9 7 2 11 11 C 1.39204 * 120.78699 * 354.54453 * 10 9 7 12 12 N 1.32244 * 119.10696 * 180.02562 * 11 10 9 13 13 C 1.32472 * 120.81643 * 0.02562 * 12 11 10 14 14 N 1.38543 * 119.13402 * 179.71803 * 13 12 11 15 15 N 1.32477 * 121.72819 * 359.97438 * 13 12 11 16 16 C 1.32232 * 120.81159 * 0.02562 * 15 13 12 17 17 H 0.97003 * 119.99920 * 0.02562 * 1 2 3 18 18 H 1.07992 * 120.44844 * 359.97438 * 11 10 9 19 19 H 0.97001 * 120.00457 * 0.02562 * 14 13 12 20 20 H 0.97007 * 119.99451 * 179.97438 * 14 13 12 21 21 H 1.07997 * 120.44434 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6962 -1.2126 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0704 -3.5050 0.1077 11 6 3.4616 -3.4569 0.0985 12 7 4.1449 -4.5842 0.2044 13 6 3.5215 -5.7476 0.3175 14 7 4.2718 -6.9077 0.4204 15 7 2.1994 -5.8313 0.3299 16 6 1.4511 -4.7458 0.2282 17 1 -0.4850 0.8401 -0.0004 18 1 3.9760 -2.5120 0.0053 19 1 5.2406 -6.8613 0.4094 20 1 3.8282 -7.7663 0.5042 21 1 0.3738 -4.8209 0.2385 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726610.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = 4.902191 kcal Electronic energy + Delta-G solvation = -10233.930102 eV Core-core repulsion = 8110.268941 eV Total energy + Delta-G solvation = -2123.661161 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.82926 -39.26990 -35.29747 -34.47900 -34.17422 -29.98164 -27.50686 -25.39732 -23.84474 -20.45277 -19.14536 -18.73440 -17.90146 -16.38362 -16.29133 -16.18393 -15.19967 -14.93893 -14.76531 -14.30191 -13.56907 -12.80094 -12.72704 -12.15431 -11.73419 -11.69307 -11.42800 -10.64422 -9.96273 -8.69681 -8.46073 -6.12315 0.15341 0.48807 1.40624 1.50326 1.55899 2.17884 2.43812 2.87425 3.15988 3.33200 3.41501 3.84104 4.18800 4.44851 4.88852 5.21435 5.41603 5.94021 6.02397 6.53478 6.55746 6.97281 7.58130 7.68680 8.75266 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.091448 B = 0.010645 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.113046 B = 2629.667014 C = 2923.734670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.417 4.417 8 H 0.104 0.896 9 O -0.210 6.210 10 C -0.022 4.022 11 C 0.074 3.926 12 N -0.541 5.541 13 C 0.476 3.524 14 N -0.815 5.815 15 N -0.534 5.534 16 C 0.123 3.877 17 H 0.274 0.726 18 H 0.174 0.826 19 H 0.418 0.582 20 H 0.419 0.581 21 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 -5.740 0.526 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.121 0.879 9 O -0.115 6.115 10 C -0.079 4.079 11 C -0.093 4.093 12 N -0.264 5.264 13 C 0.117 3.883 14 N -0.371 5.371 15 N -0.257 5.257 16 C -0.047 4.047 17 H 0.083 0.917 18 H 0.191 0.809 19 H 0.250 0.750 20 H 0.251 0.749 21 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.002 -6.334 0.576 9.459 hybrid contribution -0.172 1.187 -0.059 1.201 sum 6.830 -5.147 0.517 8.568 Atomic orbital electron populations 1.70167 1.07942 1.29046 1.47977 1.26513 0.96802 1.02542 0.95613 0.84667 0.77412 0.74350 0.79974 1.18108 1.19830 1.18206 1.21727 0.92567 0.81283 1.53715 0.87875 1.83982 1.34326 1.11565 1.81598 1.21151 0.93315 0.90482 1.02910 1.23081 0.90685 0.96727 0.98853 1.67662 1.41052 0.97869 1.19841 1.19552 0.85813 0.87652 0.95238 1.41291 1.08593 1.03569 1.83631 1.67796 1.05775 1.31604 1.20528 1.22380 1.00768 0.84451 0.97051 0.91684 0.80926 0.75008 0.74930 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.54 13.67 21.61 0.30 -53.25 14 2 C -0.02 -0.86 5.49 84.83 0.47 -0.39 14 3 Si 1.02 40.72 29.55 68.60 2.03 42.75 14 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 14 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 7 C -0.42 -22.80 9.51 67.92 0.65 -22.15 14 8 H 0.10 5.07 5.28 -2.91 -0.02 5.06 14 9 O -0.21 -11.84 9.78 -23.48 -0.23 -12.07 14 10 C -0.02 -1.05 6.69 22.73 0.15 -0.90 14 11 C 0.07 3.25 10.43 84.86 0.88 4.14 14 12 N -0.54 -21.74 10.45 -197.45 -2.06 -23.80 14 13 C 0.48 17.61 8.67 261.43 2.27 19.88 14 14 N -0.82 -20.97 9.07 -59.68 -0.54 -21.51 14 15 N -0.53 -20.83 10.45 -197.45 -2.06 -22.90 14 16 C 0.12 5.18 11.27 84.87 0.96 6.13 14 17 H 0.27 14.78 8.31 -92.71 -0.77 14.01 14 18 H 0.17 7.23 5.77 -2.91 -0.02 7.21 14 19 H 0.42 8.82 8.94 -92.71 -0.83 7.99 14 20 H 0.42 8.69 8.94 -92.70 -0.83 7.86 14 21 H 0.18 6.78 8.06 -2.91 -0.02 6.76 14 Total: -1.00 -65.53 201.66 2.43 -63.09 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.36 Total: 20.98 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.37 Total: 6.70 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -4.37 Total: -121.46 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.23 Total: -12.07 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -65.53 2.43 -63.09 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726610.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.996 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds