Wall clock time and date at job start Mon Mar 30 2020 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48499 * 109.47361 * 239.99906 * 3 2 1 5 5 H 1.48505 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47176 * 119.99690 * 3 2 1 7 7 C 1.39863 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 163.12898 * 7 2 1 9 9 C 1.41066 * 119.99880 * 343.12393 * 7 2 1 10 10 C 1.40997 * 121.00509 * 335.84862 * 9 7 2 11 11 N 1.31875 * 118.92265 * 179.72928 * 10 9 7 12 12 C 1.32828 * 121.17122 * 0.49897 * 11 10 9 13 13 N 1.37959 * 118.86756 * 179.75708 * 12 11 10 14 14 N 1.32641 * 122.26154 * 359.48195 * 12 11 10 15 15 C 1.32378 * 120.92431 * 0.25546 * 14 12 11 16 16 O 1.35287 * 120.63625 * 179.97438 * 15 14 12 17 17 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 18 18 H 1.07995 * 120.53810 * 359.97438 * 10 9 7 19 19 H 0.96998 * 119.99462 * 179.73723 * 13 12 11 20 20 H 0.97000 * 120.00139 * 359.45703 * 13 12 11 21 21 H 0.96699 * 113.99768 * 89.99939 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0971 1.6965 -1.2125 5 1 1.2783 2.7465 0.0006 6 1 3.0970 1.6965 1.2125 7 6 2.0087 -1.2112 -0.0005 8 1 3.0539 -1.2312 -0.2720 9 6 1.3490 -2.4068 0.3536 10 6 0.1992 -2.3876 1.1694 11 7 -0.3882 -3.5292 1.4707 12 6 0.0904 -4.6865 1.0280 13 7 -0.5589 -5.8528 1.3764 14 7 1.1681 -4.7589 0.2581 15 6 1.8223 -3.6655 -0.1011 16 8 2.9211 -3.7462 -0.8861 17 1 -0.4850 0.8401 0.0004 18 1 -0.1964 -1.4528 1.5383 19 1 -0.2257 -6.7067 1.0590 20 1 -1.3462 -5.8192 1.9420 21 1 2.7319 -3.7016 -1.8334 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260751961.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:36 Heat of formation + Delta-G solvation = -24.388154 kcal Electronic energy + Delta-G solvation = -10467.802618 eV Core-core repulsion = 8342.871332 eV Total energy + Delta-G solvation = -2124.931286 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.15294 -38.11916 -36.32150 -34.47893 -33.26968 -31.20540 -26.91204 -24.54993 -23.45097 -19.71120 -19.36428 -18.70730 -17.23400 -16.92150 -16.13984 -15.70113 -15.23779 -14.74863 -14.28208 -13.67389 -13.03618 -12.86924 -12.52515 -12.14249 -11.54619 -11.17670 -11.02226 -10.79723 -9.73387 -9.07553 -8.70526 -6.26814 0.56475 0.81923 1.44092 1.54861 1.58354 2.22152 2.64344 2.75492 3.27312 3.66177 4.21591 4.61482 4.89021 5.14609 5.37425 5.62191 6.19839 6.29067 6.59000 6.73234 6.87260 6.98469 7.08783 7.99680 8.26083 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.063959 B = 0.014243 C = 0.012001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.676240 B = 1965.385255 C = 2332.590231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.085 0.915 9 C -0.052 4.052 10 C 0.109 3.891 11 N -0.564 5.564 12 C 0.448 3.552 13 N -0.828 5.828 14 N -0.578 5.578 15 C 0.229 3.771 16 O -0.478 6.478 17 H 0.296 0.704 18 H 0.161 0.839 19 H 0.410 0.590 20 H 0.412 0.588 21 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -0.195 -0.382 0.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.103 0.897 9 C -0.062 4.062 10 C -0.061 4.061 11 N -0.286 5.286 12 C 0.091 3.909 13 N -0.384 5.384 14 N -0.310 5.310 15 C 0.042 3.958 16 O -0.284 6.284 17 H 0.107 0.893 18 H 0.178 0.822 19 H 0.241 0.759 20 H 0.243 0.757 21 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.028 -0.861 0.300 0.912 hybrid contribution 0.282 0.987 -0.711 1.249 sum 0.310 0.126 -0.411 0.530 Atomic orbital electron populations 1.69783 1.08951 1.31505 1.34966 1.26806 0.95530 1.04587 0.90970 0.85099 0.78609 0.75029 0.80124 1.18274 1.19017 1.18619 1.19412 0.98097 0.90868 1.40659 0.89665 1.19397 0.95948 0.94121 0.96690 1.23158 0.94510 0.94161 0.94290 1.67442 1.34968 0.98543 1.27633 1.18861 0.89048 0.87477 0.95479 1.40952 1.33989 1.03247 1.60223 1.66650 1.09913 1.35038 1.19419 1.19232 0.90712 0.87603 0.98299 1.84536 1.27235 1.95390 1.21242 0.89344 0.82236 0.75947 0.75696 0.74802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.46 10.94 21.82 0.24 -40.23 14 2 C 0.04 1.73 5.19 85.22 0.44 2.17 14 3 Si 0.99 35.89 29.59 68.60 2.03 37.92 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -9.05 7.11 99.48 0.71 -8.35 14 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 7 C -0.46 -23.73 8.79 23.36 0.21 -23.53 14 8 H 0.09 4.29 7.71 -2.91 -0.02 4.27 14 9 C -0.05 -2.84 5.61 -20.99 -0.12 -2.95 14 10 C 0.11 5.84 9.98 85.36 0.85 6.70 14 11 N -0.56 -28.73 10.42 -196.33 -2.05 -30.78 14 12 C 0.45 21.45 8.65 261.49 2.26 23.71 14 13 N -0.83 -29.64 9.04 -59.77 -0.54 -30.19 14 14 N -0.58 -29.12 10.45 -309.48 -3.23 -32.36 14 15 C 0.23 11.92 7.88 85.53 0.67 12.59 14 16 O -0.48 -21.82 12.97 -85.72 -1.11 -22.94 14 17 H 0.30 13.01 8.30 -92.71 -0.77 12.24 14 18 H 0.16 8.56 6.21 -2.91 -0.02 8.54 14 19 H 0.41 12.59 8.94 -92.71 -0.83 11.76 14 20 H 0.41 12.64 8.94 -92.71 -0.83 11.81 14 21 H 0.39 14.20 9.06 -74.06 -0.67 13.53 14 Total: -1.00 -61.79 199.97 -1.36 -63.15 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -1.02 Total: 36.72 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 4.32 Total: 18.68 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -5.58 Total: -133.54 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.11 Total: -22.94 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -61.79 -1.36 -63.15 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260751961.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.765 kcal (2) G-P(sol) polarization free energy of solvation -61.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds