Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99640 * 2 1 4 4 H 1.08996 * 109.47321 * 325.78111 * 3 2 1 5 5 C 1.50702 * 109.46768 * 205.78364 * 3 2 1 6 6 H 1.08005 * 120.00023 * 239.99699 * 5 3 2 7 7 C 1.37877 * 120.00144 * 60.00037 * 5 3 2 8 8 N 1.31519 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00306 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47004 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47335 * 119.99616 * 9 7 5 12 12 H 1.48501 * 109.47102 * 240.00227 * 9 7 5 13 13 C 1.50696 * 109.47341 * 85.78498 * 3 2 1 14 14 C 1.34517 * 125.79003 * 225.52977 * 13 3 2 15 15 C 1.41383 * 106.83794 * 179.88753 * 14 13 3 16 16 C 1.34505 * 106.84494 * 0.37298 * 15 14 13 17 17 O 1.34302 * 108.42125 * 359.76973 * 16 15 14 18 18 H 1.09003 * 109.46665 * 184.46112 * 1 2 3 19 19 H 1.09002 * 109.47144 * 304.46220 * 1 2 3 20 20 H 1.08996 * 109.46807 * 64.46460 * 1 2 3 21 21 H 1.00905 * 110.99786 * 123.95108 * 2 1 3 22 22 H 0.96998 * 120.00133 * 179.97438 * 8 7 5 23 23 H 1.08001 * 126.57773 * 0.02562 * 14 13 3 24 24 H 1.08001 * 126.57446 * 180.16371 * 15 14 13 25 25 H 1.08005 * 125.79633 * 179.74903 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3323 2.0152 -0.5779 5 6 3.3698 1.3820 -0.6180 6 1 4.2183 1.7215 -0.0423 7 6 3.5443 0.9582 -1.9184 8 7 2.5112 0.5444 -2.6194 9 14 5.2477 0.9719 -2.6848 10 1 6.2320 1.4777 -1.6944 11 1 5.6190 -0.4075 -3.0907 12 1 5.2466 1.8557 -3.8781 13 6 2.0779 1.8779 1.4169 14 6 1.6717 3.0867 1.8452 15 6 1.9316 3.1376 3.2340 16 6 2.4886 1.9603 3.5698 17 8 2.5748 1.2012 2.4653 18 1 -0.3633 -1.0246 0.0799 19 1 -0.3633 0.5815 0.8473 20 1 -0.3633 0.4430 -0.9273 21 1 1.8306 -0.5261 0.7814 22 1 2.6339 0.2466 -3.5343 23 1 1.2297 3.8674 1.2440 24 1 1.7257 3.9647 3.8973 25 1 2.8121 1.6740 4.5597 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260780060.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -2.770900 kcal Electronic energy + Delta-G solvation = -10805.264482 eV Core-core repulsion = 8784.810934 eV Total energy + Delta-G solvation = -2020.453548 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.31650 -37.26063 -34.11547 -33.75938 -31.14527 -28.39041 -25.70436 -23.83345 -22.42576 -21.12577 -18.67057 -18.30382 -16.68546 -16.50606 -16.05008 -15.34079 -14.82108 -13.95428 -13.70554 -13.60828 -13.48489 -13.26510 -12.81953 -12.59494 -12.41005 -11.91051 -11.36675 -10.72252 -10.56710 -9.22763 -8.83763 -8.01721 -6.23500 1.00691 1.43539 1.45684 1.56676 1.83646 2.33016 2.47799 3.19633 3.98933 4.10871 4.26744 4.37574 4.62470 4.72353 4.90071 5.05485 5.08545 5.16750 5.36531 5.72459 5.76191 6.06492 6.32353 6.58328 6.86316 7.03013 7.47792 9.01753 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.045698 B = 0.014751 C = 0.012322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.576273 B = 1897.757757 C = 2271.725599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.669 5.669 3 C 0.295 3.705 4 H 0.038 0.962 5 C -0.546 4.546 6 H 0.043 0.957 7 C 0.040 3.960 8 N -0.879 5.879 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.276 1.276 13 C -0.018 4.018 14 C -0.253 4.253 15 C -0.217 4.217 16 C -0.067 4.067 17 O -0.193 6.193 18 H 0.069 0.931 19 H 0.005 0.995 20 H 0.045 0.955 21 H 0.323 0.677 22 H 0.259 0.741 23 H 0.143 0.857 24 H 0.173 0.827 25 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 1.979 8.630 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.298 5.298 3 C 0.187 3.813 4 H 0.055 0.945 5 C -0.585 4.585 6 H 0.061 0.939 7 C -0.164 4.164 8 N -0.514 5.514 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.201 1.201 13 C -0.071 4.071 14 C -0.273 4.273 15 C -0.235 4.235 16 C -0.133 4.133 17 O -0.090 6.090 18 H 0.088 0.912 19 H 0.024 0.976 20 H 0.064 0.936 21 H 0.140 0.860 22 H 0.069 0.931 23 H 0.160 0.840 24 H 0.191 0.809 25 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.307 1.535 7.735 7.994 hybrid contribution 0.447 0.542 0.355 0.787 sum -0.860 2.076 8.090 8.396 Atomic orbital electron populations 1.22063 0.89364 1.00682 0.98608 1.60680 1.06024 1.15071 1.47985 1.17821 0.95772 0.86531 0.81186 0.94465 1.21104 0.92926 1.46367 0.98096 0.93919 1.25623 1.00022 0.93607 0.97152 1.70163 1.31039 1.40975 1.09252 0.85587 0.80353 0.77784 0.78236 1.19833 1.20431 1.20149 1.24432 0.98163 0.93454 0.91023 1.21833 1.10275 0.98367 0.96775 1.22074 1.06052 1.00299 0.95114 1.24813 1.05457 0.91712 0.91329 1.83989 1.64548 1.43576 1.16859 0.91198 0.97611 0.93627 0.86046 0.93150 0.83961 0.80924 0.74470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.79 10.48 127.69 1.34 3.13 15 2 N -0.67 -33.00 5.90 -522.46 -3.08 -36.09 15 3 C 0.30 15.42 2.32 43.42 0.10 15.52 15 4 H 0.04 2.11 7.82 -2.39 -0.02 2.09 15 5 C -0.55 -31.25 8.75 25.60 0.22 -31.03 15 6 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 7 C 0.04 2.26 5.39 84.65 0.46 2.71 15 8 N -0.88 -51.16 12.77 21.45 0.27 -50.88 15 9 Si 0.96 44.33 29.54 68.60 2.03 46.36 15 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 13 C -0.02 -0.84 5.73 24.83 0.14 -0.69 15 14 C -0.25 -10.21 10.79 22.19 0.24 -9.97 15 15 C -0.22 -7.01 10.91 22.19 0.24 -6.77 15 16 C -0.07 -2.12 12.09 66.96 0.81 -1.31 15 17 O -0.19 -8.13 10.21 -2.52 -0.03 -8.16 15 18 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 19 H 0.01 0.22 7.96 -2.39 -0.02 0.20 15 20 H 0.04 2.01 8.13 -2.39 -0.02 1.99 15 21 H 0.32 15.25 8.20 -89.69 -0.74 14.52 15 22 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15 23 H 0.14 5.44 8.06 -2.91 -0.02 5.42 15 24 H 0.17 4.20 8.06 -2.91 -0.02 4.18 15 25 H 0.24 4.87 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -64.11 226.67 3.19 -60.93 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.45 Total: 16.27 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.55 Total: -28.43 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -2.81 Total: -86.97 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.03 Total: -8.16 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.11 3.19 -60.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780060.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.156 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds