Wall clock time and date at job start Mon Mar 30 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48502 * 109.47177 * 270.00459 * 3 2 1 5 5 H 1.48503 * 109.47064 * 30.00487 * 3 2 1 6 6 H 1.48497 * 109.47067 * 150.00252 * 3 2 1 7 7 C 1.37868 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00657 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46967 * 180.02562 * 9 7 2 11 11 C 1.38746 * 120.38505 * 90.00359 * 10 9 7 12 12 C 1.38505 * 118.45074 * 180.02562 * 11 10 9 13 13 C 1.38567 * 119.13700 * 359.97438 * 12 11 10 14 14 F 1.35103 * 119.64758 * 180.02562 * 13 12 11 15 15 N 1.32024 * 120.69741 * 359.97438 * 13 12 11 16 16 C 1.31939 * 121.69033 * 0.04784 * 15 13 12 17 17 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 18 18 H 1.08992 * 109.46664 * 60.00426 * 9 7 2 19 19 H 1.08994 * 109.47063 * 300.00490 * 9 7 2 20 20 H 1.07996 * 120.77823 * 359.97438 * 11 10 9 21 21 H 1.07996 * 120.43235 * 179.72707 * 12 11 10 22 22 H 1.07999 * 119.59759 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6865 -4.1780 1.1964 12 6 3.5865 -5.2297 1.1496 13 6 3.9982 -5.7111 -0.0828 14 9 4.8755 -6.7370 -0.1404 15 7 3.5416 -5.1785 -1.2012 16 6 2.6841 -4.1758 -1.1918 17 1 -0.4850 0.8400 0.0004 18 1 0.6242 -2.5567 -0.8903 19 1 0.6248 -2.5571 0.8896 20 1 2.3483 -3.7818 2.1424 21 1 3.9656 -5.6662 2.0618 22 1 2.3328 -3.7656 -2.1270 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859417.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:24 Heat of formation + Delta-G solvation = -38.989627 kcal Electronic energy + Delta-G solvation = -10029.006706 eV Core-core repulsion = 7883.522291 eV Total energy + Delta-G solvation = -2145.484415 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.95867 -40.95845 -35.71210 -33.79256 -32.69289 -29.00160 -25.51306 -24.78093 -22.68916 -18.99896 -18.51507 -18.11961 -17.00480 -16.80689 -15.81308 -15.32783 -14.73364 -14.60931 -14.06115 -13.89948 -13.48746 -13.24608 -12.61326 -12.50357 -11.76623 -11.64142 -10.81652 -10.68083 -10.51689 -9.66123 -8.20951 -6.33310 0.04700 0.22629 1.42725 1.43903 1.54121 2.39731 2.65571 2.72440 3.11898 3.62103 4.01759 4.10431 4.13449 4.58632 4.88636 5.01460 5.15043 5.35033 5.67181 5.73032 5.75067 6.13948 6.68650 6.78985 7.35862 8.88388 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.077796 B = 0.009623 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.829769 B = 2908.973047 C = 2975.112424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.061 3.939 10 C -0.109 4.109 11 C -0.055 4.055 12 C -0.173 4.173 13 C 0.260 3.740 14 F -0.122 7.122 15 N -0.535 5.535 16 C 0.118 3.882 17 H 0.266 0.734 18 H 0.016 0.984 19 H 0.019 0.981 20 H 0.159 0.841 21 H 0.179 0.821 22 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -6.631 2.705 8.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.073 0.927 9 C 0.024 3.976 10 C -0.111 4.111 11 C -0.081 4.081 12 C -0.193 4.193 13 C 0.106 3.894 14 F -0.101 7.101 15 N -0.249 5.249 16 C -0.037 4.037 17 H 0.075 0.925 18 H 0.035 0.965 19 H 0.038 0.962 20 H 0.176 0.824 21 H 0.196 0.804 22 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.426 -6.911 1.918 8.994 hybrid contribution 0.040 1.043 0.524 1.168 sum 5.466 -5.868 2.442 8.383 Atomic orbital electron populations 1.70047 1.07467 1.28021 1.50920 1.25811 0.95682 1.02787 0.94555 0.85505 0.78639 0.78852 0.78412 1.20026 1.20611 1.19157 1.21338 0.93087 0.91080 1.51428 0.92715 1.18058 0.92461 0.89727 0.97385 1.21470 0.98596 0.96857 0.94212 1.21679 0.93904 0.93185 0.99307 1.22022 1.00297 0.99093 0.97917 1.18358 0.91873 0.88300 0.90888 1.91563 1.65865 1.55589 1.97106 1.66908 1.13501 1.12816 1.31712 1.22453 0.91932 0.90283 0.99075 0.92493 0.96536 0.96223 0.82359 0.80375 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.59 13.29 21.44 0.28 -52.31 14 2 C 0.01 0.57 5.46 84.65 0.46 1.04 14 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 14 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 14 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 7 C -0.53 -28.12 9.09 25.60 0.23 -27.89 14 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 14 9 C 0.06 2.95 5.13 29.11 0.15 3.10 14 10 C -0.11 -4.35 5.09 -19.78 -0.10 -4.45 14 11 C -0.06 -1.83 9.86 22.46 0.22 -1.61 14 12 C -0.17 -5.00 10.09 22.41 0.23 -4.77 14 13 C 0.26 8.76 8.41 84.74 0.71 9.47 14 14 F -0.12 -3.87 17.29 44.97 0.78 -3.09 14 15 N -0.53 -20.24 10.37 -196.92 -2.04 -22.28 14 16 C 0.12 4.53 10.86 84.64 0.92 5.45 14 17 H 0.27 14.28 8.31 -92.71 -0.77 13.51 14 18 H 0.02 0.84 8.09 -2.39 -0.02 0.82 14 19 H 0.02 0.98 8.09 -2.39 -0.02 0.96 14 20 H 0.16 4.67 8.06 -2.91 -0.02 4.64 14 21 H 0.18 3.67 8.06 -2.91 -0.02 3.65 14 22 H 0.17 6.05 8.06 -2.91 -0.02 6.03 14 Total: -1.00 -58.86 212.19 5.09 -53.77 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 1.22 Total: -0.67 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 2.82 Total: -19.67 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.76 Total: -74.59 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -58.86 5.09 -53.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859417.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.784 kcal (2) G-P(sol) polarization free energy of solvation -58.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds