Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.50706 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.39662 * 126.20577 * 265.16452 * 4 3 2 6 6 N 1.30593 * 108.62384 * 180.24976 * 5 4 3 7 7 O 1.41519 * 108.81210 * 359.75658 * 6 5 4 8 8 C 1.35137 * 107.86513 * 359.97438 * 7 6 5 9 9 C 1.39934 * 126.44131 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99997 * 180.02562 * 9 8 7 11 11 C 1.40435 * 119.99819 * 0.02916 * 9 8 7 12 12 N 1.30577 * 119.99962 * 359.72414 * 11 9 8 13 13 Si 1.86803 * 119.99636 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46971 * 60.00376 * 13 11 9 15 15 H 1.48495 * 109.47008 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47470 * 300.00305 * 13 11 9 17 17 H 1.09000 * 109.47202 * 300.00555 * 1 2 3 18 18 H 1.09003 * 109.47169 * 60.00252 * 1 2 3 19 19 H 1.08994 * 109.46958 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47268 * 239.99951 * 2 1 3 21 21 H 1.08998 * 109.47262 * 119.99291 * 2 1 3 22 22 H 1.09000 * 109.47576 * 59.99674 * 3 2 1 23 23 H 1.09007 * 109.46962 * 299.99372 * 3 2 1 24 24 H 1.07992 * 125.68931 * 359.97438 * 5 4 3 25 25 H 0.97000 * 119.99414 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 6 4.3725 1.5374 1.1220 6 7 5.6173 1.5096 0.7279 7 8 5.6471 1.3886 -0.6818 8 6 4.3699 1.3441 -1.1212 9 6 3.9521 1.2280 -2.4516 10 1 2.8983 1.2026 -2.6865 11 6 4.9033 1.1445 -3.4815 12 7 6.1774 1.1807 -3.1980 13 14 4.3456 0.9889 -5.2575 14 1 3.5233 2.1701 -5.6234 15 1 5.5340 0.9195 -6.1452 16 1 3.5361 -0.2459 -5.4158 17 1 -0.3633 0.5139 0.8899 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5137 0.8900 22 1 1.6766 1.9564 0.8899 23 1 1.6767 1.9563 -0.8901 24 1 4.0373 1.6242 2.1449 25 1 6.8343 1.1234 -3.9094 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260875757.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = 4.529154 kcal Electronic energy + Delta-G solvation = -10658.287672 eV Core-core repulsion = 8638.150678 eV Total energy + Delta-G solvation = -2020.136994 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.38660 -34.40932 -33.93073 -31.22357 -29.71815 -26.79774 -24.23688 -21.04031 -20.68623 -18.98994 -17.32459 -15.33076 -14.51513 -14.15408 -13.72879 -13.34622 -12.72621 -12.45425 -11.94981 -11.61503 -11.42895 -11.33089 -10.97740 -10.58765 -10.43849 -10.26258 -9.75292 -9.68191 -9.21628 -8.96628 -7.38761 -7.05494 -4.82804 2.78181 2.93798 2.97199 3.33362 3.72286 4.01311 4.93190 5.03827 5.67249 5.73270 5.86729 6.12741 6.22395 6.41463 6.57863 6.62291 6.76922 6.81610 7.02995 7.09878 7.22258 7.53001 7.80542 8.06807 8.35962 8.53277 9.38812 9.91532 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.016660 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.270871 B = 1680.267367 C = 2412.750082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.003 4.003 4 C -0.435 4.435 5 C 0.087 3.913 6 N -0.447 5.447 7 O -0.085 6.085 8 C 0.239 3.761 9 C -0.423 4.423 10 H 0.106 0.894 11 C 0.067 3.933 12 N -0.751 5.751 13 Si 0.927 3.073 14 H -0.259 1.259 15 H -0.274 1.274 16 H -0.259 1.259 17 H 0.046 0.954 18 H 0.049 0.951 19 H 0.043 0.957 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.152 0.848 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -1.120 -1.223 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.042 4.042 4 C -0.447 4.447 5 C -0.095 4.095 6 N -0.203 5.203 7 O -0.089 6.089 8 C 0.179 3.821 9 C -0.454 4.454 10 H 0.124 0.876 11 C -0.159 4.159 12 N -0.375 5.375 13 Si 0.749 3.251 14 H -0.183 1.183 15 H -0.198 1.198 16 H -0.183 1.183 17 H 0.065 0.935 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.170 0.830 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.514 -1.081 -0.932 5.696 hybrid contribution -1.016 -0.114 -0.844 1.326 sum -6.530 -1.196 -1.776 6.872 Atomic orbital electron populations 1.21814 0.97513 1.00389 1.01009 1.21597 0.93471 0.99078 1.01647 1.19308 0.91277 0.94213 0.99356 1.20533 0.95482 1.38132 0.90554 1.23622 0.92455 0.94844 0.98585 1.79946 1.18036 1.34612 0.87733 1.89348 1.24238 1.78569 1.16757 1.20022 0.83012 0.85724 0.93382 1.19010 0.95308 1.43508 0.87578 0.87613 1.26340 0.94402 0.92096 1.03021 1.69693 1.01821 1.29324 1.36663 0.86043 0.79368 0.80407 0.79241 1.18338 1.19823 1.18331 0.93507 0.93170 0.93791 0.92080 0.93126 0.94101 0.93281 0.83027 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 15 2 C -0.12 -2.20 5.92 -26.73 -0.16 -2.36 15 3 C 0.00 -0.07 5.41 -27.88 -0.15 -0.22 15 4 C -0.44 -10.87 5.48 -103.67 -0.57 -11.44 15 5 C 0.09 2.14 11.93 -17.55 -0.21 1.94 15 6 N -0.45 -12.58 12.91 30.54 0.39 -12.18 15 7 O -0.08 -2.56 10.49 6.69 0.07 -2.49 15 8 C 0.24 6.69 6.88 -38.53 -0.27 6.42 15 9 C -0.42 -11.00 9.09 -38.12 -0.35 -11.35 15 10 H 0.11 2.52 7.42 -52.49 -0.39 2.13 15 11 C 0.07 1.64 5.50 -17.26 -0.09 1.54 15 12 N -0.75 -19.76 12.03 55.57 0.67 -19.10 15 13 Si 0.93 17.72 29.56 -169.99 -5.03 12.69 15 14 H -0.26 -4.84 7.11 56.52 0.40 -4.43 15 15 H -0.27 -5.08 7.11 56.52 0.40 -4.67 15 16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 17 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 20 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.05 1.00 7.76 -51.93 -0.40 0.60 15 24 H 0.15 3.08 8.06 -52.49 -0.42 2.66 15 25 H 0.29 6.82 8.29 -40.82 -0.34 6.48 15 LS Contribution 226.81 15.07 3.42 3.42 Total: -1.00 -29.58 226.81 -4.79 -34.37 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.89 Total: 0.59 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.43 Total: -17.28 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 1.06 Total: -31.28 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.07 Total: -2.49 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.58 -4.79 -34.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260875757.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.895 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds