Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.50706 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.39662 * 126.20577 * 265.16452 * 4 3 2 6 6 N 1.30593 * 108.62384 * 180.24976 * 5 4 3 7 7 O 1.41519 * 108.81210 * 359.75658 * 6 5 4 8 8 C 1.35137 * 107.86513 * 359.97438 * 7 6 5 9 9 C 1.39934 * 126.44131 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99997 * 180.02562 * 9 8 7 11 11 C 1.40435 * 119.99819 * 0.02916 * 9 8 7 12 12 N 1.30577 * 119.99962 * 359.72414 * 11 9 8 13 13 Si 1.86803 * 119.99636 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46971 * 60.00376 * 13 11 9 15 15 H 1.48495 * 109.47008 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47470 * 300.00305 * 13 11 9 17 17 H 1.09000 * 109.47202 * 300.00555 * 1 2 3 18 18 H 1.09003 * 109.47169 * 60.00252 * 1 2 3 19 19 H 1.08994 * 109.46958 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47268 * 239.99951 * 2 1 3 21 21 H 1.08998 * 109.47262 * 119.99291 * 2 1 3 22 22 H 1.09000 * 109.47576 * 59.99674 * 3 2 1 23 23 H 1.09007 * 109.46962 * 299.99372 * 3 2 1 24 24 H 1.07992 * 125.68931 * 359.97438 * 5 4 3 25 25 H 0.97000 * 119.99414 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 6 4.3725 1.5374 1.1220 6 7 5.6173 1.5096 0.7279 7 8 5.6471 1.3886 -0.6818 8 6 4.3699 1.3441 -1.1212 9 6 3.9521 1.2280 -2.4516 10 1 2.8983 1.2026 -2.6865 11 6 4.9033 1.1445 -3.4815 12 7 6.1774 1.1807 -3.1980 13 14 4.3456 0.9889 -5.2575 14 1 3.5233 2.1701 -5.6234 15 1 5.5340 0.9195 -6.1452 16 1 3.5361 -0.2459 -5.4158 17 1 -0.3633 0.5139 0.8899 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5137 0.8900 22 1 1.6766 1.9564 0.8899 23 1 1.6767 1.9563 -0.8901 24 1 4.0373 1.6242 2.1449 25 1 6.8343 1.1234 -3.9094 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260875757.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -13.919650 kcal Electronic energy + Delta-G solvation = -10659.087672 eV Core-core repulsion = 8638.150678 eV Total energy + Delta-G solvation = -2020.936994 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.40477 -36.01376 -35.83547 -33.17107 -31.57747 -28.56346 -25.99269 -22.89528 -22.32390 -20.87644 -19.31525 -17.15909 -16.24093 -15.80596 -15.65326 -15.02466 -14.36002 -13.97400 -13.74773 -13.27697 -13.02994 -13.01096 -12.50594 -12.16660 -11.94848 -11.87939 -11.51455 -11.31881 -11.11812 -10.97705 -9.39855 -8.92040 -6.82754 1.00673 1.36399 1.54060 1.59103 2.11535 2.13426 2.89365 3.09083 4.19987 4.31366 4.46241 4.54772 4.72095 4.91769 4.96730 5.10422 5.22938 5.26681 5.32527 5.41783 5.68696 5.71636 5.86752 6.14942 6.41084 6.56834 7.34386 8.08154 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.016660 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.270871 B = 1680.267367 C = 2412.750082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.001 4.001 4 C -0.441 4.441 5 C 0.089 3.911 6 N -0.483 5.483 7 O -0.129 6.129 8 C 0.198 3.802 9 C -0.440 4.440 10 H 0.123 0.877 11 C 0.019 3.981 12 N -0.795 5.795 13 Si 1.010 2.990 14 H -0.247 1.247 15 H -0.265 1.265 16 H -0.248 1.248 17 H 0.062 0.938 18 H 0.055 0.945 19 H 0.059 0.941 20 H 0.037 0.963 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.196 0.804 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 -1.287 -2.015 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.039 4.039 4 C -0.453 4.453 5 C -0.091 4.091 6 N -0.244 5.244 7 O -0.131 6.131 8 C 0.138 3.862 9 C -0.469 4.469 10 H 0.140 0.860 11 C -0.202 4.202 12 N -0.420 5.420 13 Si 0.827 3.173 14 H -0.171 1.171 15 H -0.189 1.189 16 H -0.171 1.171 17 H 0.081 0.919 18 H 0.074 0.926 19 H 0.078 0.922 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.213 0.787 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.667 -1.248 -1.714 7.955 hybrid contribution -0.344 -0.054 -0.536 0.639 sum -8.011 -1.302 -2.250 8.422 Atomic orbital electron populations 1.21734 0.94237 1.01836 1.02097 1.21499 0.96282 0.97146 1.00424 1.19394 0.88217 0.95934 1.00351 1.21096 0.97782 1.36803 0.89621 1.24281 0.91429 0.92865 1.00535 1.79878 1.20171 1.37454 0.86924 1.89278 1.25937 1.79758 1.18137 1.20767 0.83012 0.87179 0.95258 1.19541 0.96584 1.43141 0.87669 0.85968 1.27544 0.93917 0.90588 1.08146 1.69790 1.03548 1.29707 1.38907 0.84825 0.79246 0.81038 0.72174 1.17083 1.18886 1.17122 0.91896 0.92618 0.92228 0.94371 0.93400 0.91768 0.93479 0.78739 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 15 2 C -0.12 -4.01 5.92 30.60 0.18 -3.83 15 3 C 0.00 -0.04 5.41 29.85 0.16 0.12 15 4 C -0.44 -21.98 5.48 -19.25 -0.11 -22.09 15 5 C 0.09 4.35 11.93 85.22 1.02 5.36 15 6 N -0.48 -27.82 12.91 -57.29 -0.74 -28.56 15 7 O -0.13 -8.11 10.49 26.23 0.28 -7.83 15 8 C 0.20 11.29 6.88 22.95 0.16 11.45 15 9 C -0.44 -22.99 9.09 23.22 0.21 -22.78 15 10 H 0.12 5.76 7.42 -2.91 -0.02 5.73 15 11 C 0.02 0.94 5.50 85.41 0.47 1.41 15 12 N -0.79 -42.70 12.03 21.91 0.26 -42.44 15 13 Si 1.01 35.25 29.56 68.60 2.03 37.28 15 14 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 15 H -0.26 -8.78 7.11 99.48 0.71 -8.07 15 16 H -0.25 -8.15 7.11 99.48 0.71 -7.45 15 17 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 18 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.05 1.84 7.76 -2.38 -0.02 1.82 15 24 H 0.20 7.50 8.06 -2.91 -0.02 7.47 15 25 H 0.30 14.30 8.29 -92.71 -0.77 13.53 15 Total: -1.00 -65.66 226.81 5.81 -59.86 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.17 Total: 15.02 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 2.81 Total: -33.32 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -0.48 Total: -71.00 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.28 Total: -7.83 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -65.66 5.81 -59.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260875757.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.937 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds