Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 C 1.50694 * 109.47447 * 120.00036 * 2 1 3 5 5 C 1.35033 * 128.36218 * 300.16339 * 4 2 1 6 6 O 1.34050 * 107.15513 * 180.22426 * 5 4 2 7 7 N 1.20764 * 113.17811 * 359.74258 * 6 5 4 8 8 C 1.32222 * 111.32424 * 0.02562 * 7 6 5 9 9 C 1.41736 * 127.46857 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00107 * 180.02562 * 9 8 7 11 11 C 1.39985 * 119.99867 * 0.02562 * 9 8 7 12 12 N 1.30752 * 120.00036 * 359.72700 * 11 9 8 13 13 Si 1.86795 * 119.99948 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47317 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47320 * 120.00314 * 13 11 9 16 16 H 1.48507 * 109.47345 * 239.99868 * 13 11 9 17 17 H 1.09003 * 109.46778 * 299.99759 * 1 2 3 18 18 H 1.08999 * 109.47067 * 60.00069 * 1 2 3 19 19 H 1.08994 * 109.46974 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46778 * 240.00241 * 2 1 3 21 21 H 1.08996 * 109.47520 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.47221 * 300.00291 * 3 2 1 23 23 H 1.08998 * 109.47385 * 59.99755 * 3 2 1 24 24 H 1.08003 * 126.42143 * 359.93337 * 5 4 2 25 25 H 0.97000 * 119.99647 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.8102 -0.4013 2.5260 6 8 2.4607 -1.3100 3.2664 7 7 3.0447 -2.1333 2.6034 8 6 2.8826 -1.9121 1.3100 9 6 3.4151 -2.6643 0.2332 10 1 3.2046 -2.3730 -0.7852 11 6 4.2141 -3.7848 0.4898 12 7 4.4734 -4.1343 1.7227 13 14 4.9165 -4.7757 -0.9293 14 1 4.4835 -4.1735 -2.2158 15 1 6.3995 -4.7674 -0.8526 16 1 4.4246 -6.1746 -0.8477 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.8933 -0.5138 -0.8900 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9563 0.8899 24 1 1.2229 0.4259 2.8962 25 1 5.0273 -4.9105 1.9005 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 29.933812 kcal Electronic energy + Delta-G solvation = -10768.357458 eV Core-core repulsion = 8749.322093 eV Total energy + Delta-G solvation = -2019.035365 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.37758 -35.45348 -33.61187 -30.58612 -29.11132 -26.63174 -26.04337 -22.41615 -20.69368 -18.53846 -17.25426 -15.62688 -15.37726 -14.62419 -14.09431 -13.55874 -12.63813 -12.61134 -12.29980 -11.78578 -11.23916 -11.11878 -10.77896 -10.68077 -10.55272 -10.17306 -9.84595 -9.53644 -8.83288 -8.03309 -7.76944 -6.46763 -4.38903 3.06407 3.17022 3.21527 3.21803 4.07996 4.13387 4.94430 5.43174 5.52508 5.60553 5.82763 6.04173 6.15720 6.25446 6.29894 6.43161 6.52556 6.68163 6.81241 6.99758 7.24394 7.46017 7.51519 8.42070 8.73267 9.02519 10.49833 10.71706 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.045638 B = 0.014762 C = 0.012046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.380302 B = 1896.325232 C = 2323.943352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.138 4.138 4 C -0.250 4.250 5 C -0.101 4.101 6 O 0.029 5.971 7 N -0.409 5.409 8 C 0.168 3.832 9 C -0.446 4.446 10 H 0.083 0.917 11 C 0.069 3.931 12 N -0.775 5.775 13 Si 0.911 3.089 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.276 1.276 17 H 0.047 0.953 18 H 0.046 0.954 19 H 0.053 0.947 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.175 0.825 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 5.824 -3.645 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.195 4.195 4 C -0.255 4.255 5 C -0.182 4.182 6 O -0.018 6.018 7 N -0.137 5.137 8 C 0.020 3.980 9 C -0.484 4.484 10 H 0.101 0.899 11 C -0.150 4.150 12 N -0.404 5.404 13 Si 0.736 3.264 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.201 1.201 17 H 0.067 0.933 18 H 0.066 0.934 19 H 0.072 0.928 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.192 0.808 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.469 4.880 -2.688 6.563 hybrid contribution -0.012 0.008 -1.257 1.257 sum -3.481 4.888 -3.946 7.182 Atomic orbital electron populations 1.21822 0.95800 1.01486 1.00398 1.19135 0.93991 0.94089 0.95392 1.21820 1.01261 0.96021 1.00396 1.22112 1.07971 1.01323 0.94085 1.24861 1.02998 0.98373 0.91980 1.84608 1.50425 1.30584 1.36190 1.74847 1.21798 1.11843 1.05198 1.21593 0.93752 0.91296 0.91354 1.18630 1.28482 1.09167 0.92121 0.89937 1.25829 0.95454 0.97360 0.96378 1.69891 1.28584 1.22244 1.19703 0.86222 0.78930 0.79560 0.81717 1.18629 1.20104 1.20106 0.93338 0.93444 0.92760 0.90679 0.92760 0.93452 0.93335 0.80795 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.10 37.16 0.34 -1.85 15 2 C -0.01 -0.13 3.34 -91.77 -0.31 -0.44 15 3 C -0.14 -2.19 9.10 37.16 0.34 -1.85 15 4 C -0.25 -5.86 5.20 -102.03 -0.53 -6.39 15 5 C -0.10 -2.22 11.91 29.59 0.35 -1.87 15 6 O 0.03 0.76 11.09 17.19 0.19 0.95 15 7 N -0.41 -12.18 10.49 33.33 0.35 -11.83 15 8 C 0.17 4.79 7.00 -82.63 -0.58 4.21 15 9 C -0.45 -12.63 9.37 -37.59 -0.35 -12.98 15 10 H 0.08 2.18 7.40 -52.49 -0.39 1.79 15 11 C 0.07 1.90 5.50 -17.36 -0.10 1.81 15 12 N -0.78 -22.64 12.04 55.55 0.67 -21.97 15 13 Si 0.91 20.03 29.56 -169.99 -5.02 15.00 15 14 H -0.26 -5.58 7.11 56.52 0.40 -5.17 15 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 H 0.05 0.71 8.09 -51.93 -0.42 0.29 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.07 1.49 7.60 -51.93 -0.39 1.09 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 0.71 8.10 -51.93 -0.42 0.29 15 24 H 0.18 2.98 8.06 -52.48 -0.42 2.55 15 25 H 0.27 7.26 8.29 -40.82 -0.34 6.92 15 LS Contribution 225.14 15.07 3.39 3.39 Total: -1.00 -31.62 225.14 -4.13 -35.75 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -2.87 Total: -1.92 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.83 Total: -19.36 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 1.02 Total: -33.80 kcal Atomic # 8 Polarization: 0.76 SS G_CDS: 0.19 Total: 0.95 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.62 -4.13 -35.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.680 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds