Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.56233 * 60.00149 * 9 7 2 11 11 C 1.52698 * 109.55957 * 299.78856 * 9 7 2 12 12 C 1.50656 * 112.70782 * 150.31149 * 11 9 7 13 13 C 1.51580 * 113.76781 * 65.56866 * 12 11 9 14 14 C 1.52692 * 111.47081 * 293.99927 * 13 12 11 15 15 C 1.53677 * 108.94905 * 91.04876 * 14 13 12 16 16 H 1.09004 * 115.92998 * 71.17490 * 15 14 13 17 17 C 1.52993 * 117.70691 * 219.04187 * 15 14 13 18 18 C 1.53001 * 60.31201 * 104.88279 * 17 15 14 19 19 H 1.08999 * 118.70789 * 107.68597 * 18 17 15 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.07549 * 269.60898 * 11 9 7 22 22 H 1.08991 * 109.07741 * 28.58672 * 11 9 7 23 23 H 1.08997 * 107.48089 * 305.12886 * 12 11 9 24 24 H 1.08995 * 109.31559 * 187.32343 * 12 11 9 25 25 H 1.09006 * 109.07591 * 173.49084 * 13 12 11 26 26 H 1.08992 * 109.08329 * 54.51675 * 13 12 11 27 27 H 1.08994 * 109.55959 * 331.20468 * 14 13 12 28 28 H 1.09003 * 109.55527 * 210.88687 * 14 13 12 29 29 H 1.09003 * 117.46871 * 357.30364 * 17 15 14 30 30 H 1.09001 * 117.47069 * 212.46081 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6235 -2.5582 -0.8898 11 6 0.3769 -2.5847 1.2485 12 6 -0.8687 -3.4041 1.0317 13 6 -0.5960 -4.8708 0.7633 14 6 0.1334 -5.0701 -0.5633 15 6 1.6486 -5.0495 -0.3077 16 1 2.0560 -5.9163 0.2127 17 6 2.5342 -4.3456 -1.3377 18 6 2.2479 -3.6688 0.0043 19 1 3.0478 -3.6103 0.7425 20 1 -0.4850 0.8401 0.0004 21 1 0.9451 -3.0581 2.0493 22 1 0.0984 -1.5775 1.5581 23 1 -1.3925 -2.9827 0.1738 24 1 -1.5113 -3.3221 1.9082 25 1 -1.5431 -5.4096 0.7336 26 1 0.0162 -5.2730 1.5704 27 1 -0.1318 -4.2662 -1.2499 28 1 -0.1508 -6.0296 -0.9954 29 1 2.0475 -3.9345 -2.2221 30 1 3.5361 -4.7447 -1.4958 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = -15.747762 kcal Electronic energy + Delta-G solvation = -11221.682544 eV Core-core repulsion = 9401.925283 eV Total energy + Delta-G solvation = -1819.757261 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.06501 -35.50242 -34.81504 -32.02256 -28.41347 -25.82222 -24.39978 -22.21585 -20.98528 -19.54515 -18.46804 -16.79024 -16.09582 -15.61741 -15.30071 -14.33526 -14.19818 -13.81721 -13.06343 -12.88219 -12.76002 -12.55551 -12.45732 -12.28250 -11.80795 -11.47707 -11.25840 -11.15842 -10.81420 -10.41373 -10.33436 -10.01905 -8.05262 -6.17728 1.40461 1.41197 1.51243 2.44694 3.13302 3.22293 3.88586 4.14511 4.19158 4.39956 4.41695 4.57189 4.73358 4.79195 4.87311 5.03720 5.05497 5.10867 5.23433 5.27263 5.44233 5.48954 5.57405 5.66064 5.73056 5.79874 6.08774 6.19411 6.49678 6.95285 7.48988 8.99001 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.053437 B = 0.014681 C = 0.012377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.860003 B = 1906.788731 C = 2261.727660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.082 3.918 10 H -0.002 1.002 11 C -0.093 4.093 12 C -0.105 4.105 13 C -0.103 4.103 14 C -0.086 4.086 15 C -0.148 4.148 16 H 0.117 0.883 17 C -0.173 4.173 18 C -0.147 4.147 19 H 0.085 0.915 20 H 0.258 0.742 21 H 0.024 0.976 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -8.431 0.505 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.065 0.935 9 C 0.064 3.936 10 H 0.016 0.984 11 C -0.131 4.131 12 C -0.143 4.143 13 C -0.140 4.140 14 C -0.124 4.124 15 C -0.166 4.166 16 H 0.135 0.865 17 C -0.210 4.210 18 C -0.165 4.165 19 H 0.103 0.897 20 H 0.067 0.933 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.603 -8.306 0.506 8.343 hybrid contribution 0.362 1.363 -0.036 1.411 sum 0.965 -6.943 0.470 7.025 Atomic orbital electron populations 1.70092 1.07003 1.26852 1.51405 1.25700 0.95656 1.02107 0.95237 0.85697 0.78784 0.79852 0.78160 1.20196 1.19508 1.20985 1.21619 0.92925 0.92342 1.49944 0.93470 1.18256 0.91541 0.90550 0.93249 0.98410 1.20856 0.95431 0.98462 0.98316 1.20780 0.97900 0.95810 0.99789 1.21115 1.00198 0.95203 0.97513 1.21237 0.92610 1.01148 0.97367 1.22789 0.94484 0.95894 1.03408 0.86479 1.22975 1.00592 1.04199 0.93204 1.22776 1.01238 0.93953 0.98537 0.89650 0.93264 0.95759 0.93550 0.95273 0.93206 0.90863 0.91815 0.94106 0.89989 0.90789 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.83 11.59 21.45 0.25 -53.58 16 2 C 0.01 0.64 5.07 84.66 0.43 1.07 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.53 -30.09 8.55 25.60 0.22 -29.88 16 8 H 0.05 2.66 7.75 -2.91 -0.02 2.63 16 9 C 0.08 4.21 1.58 -11.41 -0.02 4.19 16 10 H 0.00 -0.12 6.26 -2.39 -0.01 -0.14 16 11 C -0.09 -4.51 4.69 29.73 0.14 -4.37 16 12 C -0.11 -4.34 5.28 29.37 0.15 -4.18 16 13 C -0.10 -3.37 5.61 30.03 0.17 -3.21 16 14 C -0.09 -2.87 5.43 30.72 0.17 -2.70 16 15 C -0.15 -5.01 5.65 -10.33 -0.06 -5.07 16 16 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 17 C -0.17 -6.27 9.82 30.59 0.30 -5.97 16 18 C -0.15 -6.21 4.92 -10.32 -0.05 -6.26 16 19 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 20 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 21 H 0.02 1.11 7.78 -2.39 -0.02 1.09 16 22 H 0.05 2.59 5.94 -2.39 -0.01 2.57 16 23 H 0.03 1.32 7.92 -2.39 -0.02 1.30 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.06 1.97 7.78 -2.39 -0.02 1.95 16 27 H 0.04 1.60 6.19 -2.39 -0.01 1.58 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -60.48 233.96 4.82 -55.66 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.09 Total: 7.62 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 1.45 Total: -56.38 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.25 Total: -53.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -60.48 4.82 -55.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.916 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds