Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99467 * 2 1 4 4 H 1.48498 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46985 * 299.99932 * 3 2 1 6 6 H 1.48496 * 109.46919 * 60.00012 * 3 2 1 7 7 C 1.37871 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.08998 * 111.15480 * 64.77774 * 9 7 2 11 11 C 1.57943 * 111.34997 * 300.00132 * 9 7 2 12 12 C 1.50784 * 105.45467 * 208.03332 * 11 9 7 13 13 C 1.51204 * 105.79202 * 104.16622 * 12 11 9 14 14 C 1.49186 * 115.16395 * 262.03345 * 13 12 11 15 15 C 1.54124 * 103.93778 * 57.55859 * 14 13 12 16 16 H 1.09006 * 113.31928 * 72.44462 * 15 14 13 17 17 C 1.47432 * 130.03643 * 234.75799 * 15 14 13 18 18 C 1.46799 * 61.68185 * 90.17329 * 17 15 14 19 19 H 1.08993 * 107.61740 * 255.73661 * 18 17 15 20 20 H 0.96993 * 120.00414 * 359.97438 * 1 2 3 21 21 H 1.09004 * 110.24267 * 89.04677 * 11 9 7 22 22 H 1.09004 * 110.24142 * 327.01854 * 11 9 7 23 23 H 1.09000 * 110.17425 * 345.09497 * 12 11 9 24 24 H 1.08999 * 110.28551 * 223.29121 * 12 11 9 25 25 H 1.09002 * 108.31875 * 23.45318 * 13 12 11 26 26 H 1.09002 * 108.31588 * 140.61735 * 13 12 11 27 27 H 1.09002 * 110.55756 * 175.97326 * 14 13 12 28 28 H 1.08996 * 110.56078 * 298.85747 * 14 13 12 29 29 H 1.09002 * 117.92223 * 342.38102 * 17 15 14 30 30 H 1.08997 * 116.44240 * 198.55950 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4992 -0.0005 10 1 0.6791 -2.6231 -0.9200 11 6 0.3273 -2.6298 1.2737 12 6 0.2095 -4.1102 1.5346 13 6 1.1073 -4.3922 2.7181 14 6 2.4605 -4.9193 2.3764 15 6 3.0580 -3.8384 1.4544 16 1 3.3380 -2.9271 1.9829 17 6 3.6183 -3.9549 0.0957 18 6 2.1838 -3.6768 0.2358 19 1 1.6461 -4.5996 0.0185 20 1 -0.4850 0.8400 0.0004 21 1 -0.6553 -2.2029 1.0725 22 1 0.7886 -2.1320 2.1267 23 1 0.5465 -4.6732 0.6643 24 1 -0.8214 -4.3708 1.7742 25 1 1.2322 -3.4674 3.2814 26 1 0.6091 -5.1181 3.3607 27 1 3.0670 -5.0284 3.2754 28 1 2.3791 -5.8702 1.8499 29 1 3.9047 -4.9464 -0.2551 30 1 4.2572 -3.1371 -0.2376 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894761.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 39.499393 kcal Electronic energy + Delta-G solvation = -11310.559031 eV Core-core repulsion = 9493.197466 eV Total energy + Delta-G solvation = -1817.361565 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.77761 -33.67101 -33.06987 -30.67598 -26.59391 -23.83984 -22.63093 -20.94260 -19.70185 -18.05757 -15.83401 -14.91879 -14.55753 -13.94980 -13.69019 -13.08793 -12.31171 -12.06922 -11.66864 -11.32213 -10.90950 -10.82806 -10.58088 -10.46239 -10.10252 -10.06508 -9.33558 -9.14656 -8.67077 -8.61024 -8.46712 -8.12967 -5.93724 -3.95996 3.32517 3.40746 3.44591 4.49298 4.65167 5.30360 5.41861 5.49638 5.72254 5.82256 6.01999 6.13432 6.21637 6.32000 6.44212 6.50863 6.59192 6.68685 6.88093 6.99395 7.09103 7.13452 7.21855 7.34031 7.51431 7.80820 7.95571 8.08774 8.55085 9.05391 9.67574 11.15108 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.052520 B = 0.014898 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.997721 B = 1879.040883 C = 2127.973075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.091 3.909 10 H 0.034 0.966 11 C -0.097 4.097 12 C -0.143 4.143 13 C -0.112 4.112 14 C -0.072 4.072 15 C -0.176 4.176 16 H 0.093 0.907 17 C -0.144 4.144 18 C -0.148 4.148 19 H 0.065 0.935 20 H 0.257 0.743 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -6.896 2.991 8.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.072 3.928 10 H 0.052 0.948 11 C -0.135 4.135 12 C -0.180 4.180 13 C -0.150 4.150 14 C -0.109 4.109 15 C -0.194 4.194 16 H 0.111 0.889 17 C -0.181 4.181 18 C -0.166 4.166 19 H 0.082 0.918 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.559 -6.778 3.022 7.850 hybrid contribution 0.428 1.032 0.116 1.123 sum 2.987 -5.746 3.137 7.196 Atomic orbital electron populations 1.69981 1.05808 1.26111 1.50904 1.24967 0.94778 0.98836 0.95304 0.86648 0.80225 0.84326 0.77474 1.19893 1.21130 1.21184 1.21090 0.92763 0.90469 1.50077 0.92733 1.18952 0.90647 0.89831 0.93320 0.94846 1.22257 1.00734 0.90945 0.99548 1.21635 0.96920 1.00785 0.98652 1.20806 0.95092 1.00470 0.98606 1.20607 0.95837 0.96461 0.98045 1.21314 1.06384 1.01126 0.90578 0.88864 1.21079 0.98884 1.00891 0.97245 1.21361 0.91376 1.01791 1.02091 0.91757 0.93272 0.92512 0.93146 0.90003 0.94255 0.92235 0.94635 0.92448 0.92759 0.90878 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 12.10 55.43 0.67 -25.10 16 2 C 0.06 1.75 5.34 -17.82 -0.10 1.65 16 3 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16 8 H 0.05 1.50 7.22 -52.49 -0.38 1.12 16 9 C 0.09 2.28 3.06 -89.54 -0.27 2.01 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.10 -2.29 4.76 -25.13 -0.12 -2.41 16 12 C -0.14 -2.78 5.64 -28.75 -0.16 -2.94 16 13 C -0.11 -1.96 5.02 -29.51 -0.15 -2.11 16 14 C -0.07 -1.19 6.21 -28.02 -0.17 -1.36 16 15 C -0.18 -3.38 5.41 -93.80 -0.51 -3.89 16 16 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 17 C -0.14 -2.73 9.79 -32.38 -0.32 -3.04 16 18 C -0.15 -3.14 3.06 -95.15 -0.29 -3.43 16 19 H 0.06 1.29 5.14 -51.93 -0.27 1.03 16 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 21 H 0.06 1.46 7.58 -51.93 -0.39 1.06 16 22 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 23 H 0.08 1.58 4.44 -51.93 -0.23 1.35 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.11 6.73 -51.93 -0.35 0.76 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 LS Contribution 230.58 15.07 3.47 3.47 Total: -1.00 -27.98 230.58 -7.72 -35.70 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.46 Total: -0.85 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -2.38 Total: -29.76 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.67 Total: -25.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.98 -7.72 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894761.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.195 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds