Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99467 * 2 1 4 4 H 1.48498 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46985 * 299.99932 * 3 2 1 6 6 H 1.48496 * 109.46919 * 60.00012 * 3 2 1 7 7 C 1.37871 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.08998 * 111.15480 * 64.77774 * 9 7 2 11 11 C 1.57943 * 111.34997 * 300.00132 * 9 7 2 12 12 C 1.50784 * 105.45467 * 208.03332 * 11 9 7 13 13 C 1.51204 * 105.79202 * 104.16622 * 12 11 9 14 14 C 1.49186 * 115.16395 * 262.03345 * 13 12 11 15 15 C 1.54124 * 103.93778 * 57.55859 * 14 13 12 16 16 H 1.09006 * 113.31928 * 72.44462 * 15 14 13 17 17 C 1.47432 * 130.03643 * 234.75799 * 15 14 13 18 18 C 1.46799 * 61.68185 * 90.17329 * 17 15 14 19 19 H 1.08993 * 107.61740 * 255.73661 * 18 17 15 20 20 H 0.96993 * 120.00414 * 359.97438 * 1 2 3 21 21 H 1.09004 * 110.24267 * 89.04677 * 11 9 7 22 22 H 1.09004 * 110.24142 * 327.01854 * 11 9 7 23 23 H 1.09000 * 110.17425 * 345.09497 * 12 11 9 24 24 H 1.08999 * 110.28551 * 223.29121 * 12 11 9 25 25 H 1.09002 * 108.31875 * 23.45318 * 13 12 11 26 26 H 1.09002 * 108.31588 * 140.61735 * 13 12 11 27 27 H 1.09002 * 110.55756 * 175.97326 * 14 13 12 28 28 H 1.08996 * 110.56078 * 298.85747 * 14 13 12 29 29 H 1.09002 * 117.92223 * 342.38102 * 17 15 14 30 30 H 1.08997 * 116.44240 * 198.55950 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4992 -0.0005 10 1 0.6791 -2.6231 -0.9200 11 6 0.3273 -2.6298 1.2737 12 6 0.2095 -4.1102 1.5346 13 6 1.1073 -4.3922 2.7181 14 6 2.4605 -4.9193 2.3764 15 6 3.0580 -3.8384 1.4544 16 1 3.3380 -2.9271 1.9829 17 6 3.6183 -3.9549 0.0957 18 6 2.1838 -3.6768 0.2358 19 1 1.6461 -4.5996 0.0185 20 1 -0.4850 0.8400 0.0004 21 1 -0.6553 -2.2029 1.0725 22 1 0.7886 -2.1320 2.1267 23 1 0.5465 -4.6732 0.6643 24 1 -0.8214 -4.3708 1.7742 25 1 1.2322 -3.4674 3.2814 26 1 0.6091 -5.1181 3.3607 27 1 3.0670 -5.0284 3.2754 28 1 2.3791 -5.8702 1.8499 29 1 3.9047 -4.9464 -0.2551 30 1 4.2572 -3.1371 -0.2376 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894761.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 24.826834 kcal Electronic energy + Delta-G solvation = -11311.195281 eV Core-core repulsion = 9493.197466 eV Total energy + Delta-G solvation = -1817.997815 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37694 -35.40706 -34.91882 -32.48407 -28.46420 -25.64995 -24.40338 -22.56542 -21.16191 -19.88494 -17.91622 -16.80674 -16.05675 -15.72375 -15.25984 -14.78370 -14.13292 -13.74184 -13.30849 -13.05409 -12.83677 -12.67956 -12.44041 -12.08082 -11.96222 -11.55006 -11.06937 -10.85809 -10.66011 -10.51359 -10.17198 -9.92094 -8.09186 -6.18298 1.37148 1.39136 1.50068 2.43106 3.10799 3.20941 3.84004 4.08393 4.20229 4.28874 4.49152 4.62705 4.72123 4.82919 4.90987 5.04000 5.11030 5.20008 5.23083 5.40952 5.46818 5.49689 5.58371 5.62489 5.67549 5.83133 5.93152 6.02670 6.44723 6.91172 7.48411 8.98857 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.052520 B = 0.014898 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.997721 B = 1879.040883 C = 2127.973075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.048 0.952 9 C 0.078 3.922 10 H 0.002 0.998 11 C -0.084 4.084 12 C -0.136 4.136 13 C -0.111 4.111 14 C -0.063 4.063 15 C -0.162 4.162 16 H 0.065 0.935 17 C -0.132 4.132 18 C -0.173 4.173 19 H 0.082 0.918 20 H 0.258 0.742 21 H 0.023 0.977 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -8.366 3.697 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.060 3.940 10 H 0.020 0.980 11 C -0.122 4.122 12 C -0.172 4.172 13 C -0.148 4.148 14 C -0.100 4.100 15 C -0.180 4.180 16 H 0.084 0.916 17 C -0.169 4.169 18 C -0.191 4.191 19 H 0.100 0.900 20 H 0.067 0.933 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.652 -8.254 3.727 9.765 hybrid contribution 0.075 1.516 -0.136 1.523 sum 3.726 -6.739 3.592 8.497 Atomic orbital electron populations 1.70109 1.07126 1.26856 1.51810 1.25730 0.95611 1.02194 0.95164 0.85660 0.79137 0.80266 0.77540 1.19289 1.20613 1.20804 1.21397 0.92674 0.91975 1.49681 0.93333 1.18850 0.91813 0.90848 0.92526 0.98021 1.22060 0.98191 0.93981 0.97979 1.21534 0.98514 0.97205 0.99989 1.20721 0.95812 1.00570 0.97717 1.20654 0.94786 0.96114 0.98490 1.21437 1.04784 1.01378 0.90449 0.91638 1.21143 0.96700 1.02201 0.96862 1.21104 0.92639 1.00391 1.04979 0.89994 0.93273 0.95810 0.95249 0.89403 0.92945 0.94180 0.91503 0.90020 0.90421 0.87370 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 12.10 21.45 0.26 -54.66 16 2 C 0.01 0.65 5.34 84.65 0.45 1.10 16 3 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 7 C -0.52 -29.37 8.56 25.60 0.22 -29.15 16 8 H 0.05 2.73 7.22 -2.91 -0.02 2.71 16 9 C 0.08 4.03 3.06 -10.09 -0.03 4.00 16 10 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 11 C -0.08 -4.07 4.76 31.63 0.15 -3.92 16 12 C -0.14 -5.08 5.64 29.29 0.17 -4.91 16 13 C -0.11 -3.56 5.02 28.79 0.14 -3.42 16 14 C -0.06 -1.83 6.21 29.76 0.18 -1.64 16 15 C -0.16 -5.91 5.41 -12.85 -0.07 -5.98 16 16 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 17 C -0.13 -4.72 9.79 26.93 0.26 -4.46 16 18 C -0.17 -7.16 3.06 -13.73 -0.04 -7.21 16 19 H 0.08 3.10 5.14 -2.39 -0.01 3.09 16 20 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 21 H 0.02 1.25 7.58 -2.39 -0.02 1.24 16 22 H 0.03 1.50 6.63 -2.39 -0.02 1.49 16 23 H 0.09 3.21 4.44 -2.39 -0.01 3.20 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.44 6.73 -2.39 -0.02 1.43 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.07 2.83 7.75 -2.39 -0.02 2.81 16 Total: -1.00 -61.26 230.58 4.83 -56.43 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.10 Total: 6.84 kcal Atomic # 6 Polarization: -57.02 SS G_CDS: 1.44 Total: -55.58 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.26 Total: -54.66 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.26 4.83 -56.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894761.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.258 kcal (2) G-P(sol) polarization free energy of solvation -61.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds