Wall clock time and date at job start Mon Mar 30 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00384 * 2 1 4 4 H 1.48497 * 109.47668 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47154 * 299.99957 * 3 2 1 6 6 H 1.48501 * 109.47169 * 59.99739 * 3 2 1 7 7 C 1.37880 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99476 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47133 * 179.97438 * 9 7 2 11 11 C 1.46184 * 123.95795 * 270.17770 * 10 9 7 12 12 C 1.53722 * 107.16325 * 180.21090 * 11 10 9 13 13 H 1.09006 * 118.03439 * 139.00820 * 12 11 10 14 14 C 1.53021 * 118.48206 * 296.96315 * 12 11 10 15 15 C 1.52982 * 60.37951 * 90.26110 * 14 12 11 16 16 H 1.09000 * 119.08487 * 112.60399 * 15 14 12 17 17 C 1.33822 * 123.94909 * 90.02124 * 10 9 7 18 18 O 1.21283 * 124.57397 * 359.88052 * 17 10 9 19 19 H 0.97009 * 119.99501 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47600 * 59.99842 * 9 7 2 21 21 H 1.09000 * 109.47618 * 299.99772 * 9 7 2 22 22 H 1.09000 * 110.09712 * 60.71181 * 11 10 9 23 23 H 1.09000 * 109.85145 * 299.56856 * 11 10 9 24 24 H 1.09001 * 117.45349 * 342.66106 * 14 12 11 25 25 H 1.08993 * 117.45955 * 197.86393 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7363 -4.2310 -1.2120 12 6 3.6874 -5.3540 -0.7678 13 1 3.6620 -6.2945 -1.3183 14 6 4.9361 -4.9786 0.0330 15 6 3.6349 -5.3031 0.7692 16 1 3.5826 -6.2039 1.3807 17 6 2.6882 -4.1810 1.1106 18 8 2.4009 -3.8424 2.2392 19 1 -0.4850 0.8402 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 3.2824 -3.4930 -1.7996 23 1 1.9216 -4.6474 -1.8044 24 1 5.2537 -3.9362 0.0094 25 1 5.7396 -5.7132 0.0848 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903447.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:33 Heat of formation + Delta-G solvation = -27.448803 kcal Electronic energy + Delta-G solvation = -10728.119653 eV Core-core repulsion = 8706.595991 eV Total energy + Delta-G solvation = -2021.523662 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.77463 -37.95711 -36.12304 -34.37305 -29.88166 -28.27329 -25.89658 -23.57948 -21.92943 -20.21551 -18.79669 -17.73154 -16.73561 -16.37013 -16.30501 -15.10251 -14.89982 -14.46230 -14.06763 -13.50960 -13.44523 -13.10230 -12.72474 -12.43983 -12.23581 -11.82266 -11.38581 -11.26202 -10.73302 -10.55459 -9.54582 -8.30013 -6.46545 1.34034 1.36735 1.48460 1.55844 2.24796 2.41104 2.70894 2.99542 3.44870 3.60523 3.91723 3.95759 4.47585 4.70427 4.74261 4.84291 4.92872 4.97783 5.06606 5.21419 5.50777 5.79147 5.95134 6.50789 6.62265 7.18648 7.37756 8.77642 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.058250 B = 0.012005 C = 0.011699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.569739 B = 2331.878884 C = 2392.705863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.053 0.947 9 C 0.266 3.734 10 N -0.606 5.606 11 C 0.114 3.886 12 C -0.133 4.133 13 H 0.180 0.820 14 C -0.106 4.106 15 C -0.222 4.222 16 H 0.154 0.846 17 C 0.508 3.492 18 O -0.604 6.604 19 H 0.270 0.730 20 H 0.032 0.968 21 H -0.003 1.003 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -9.866 -5.722 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.071 0.929 9 C 0.145 3.855 10 N -0.336 5.336 11 C -0.008 4.008 12 C -0.151 4.151 13 H 0.197 0.803 14 C -0.143 4.143 15 C -0.243 4.243 16 H 0.172 0.828 17 C 0.298 3.702 18 O -0.487 6.487 19 H 0.079 0.921 20 H 0.050 0.950 21 H 0.015 0.985 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.633 -9.513 -5.200 13.859 hybrid contribution -0.294 1.145 0.402 1.248 sum 8.339 -8.369 -4.798 12.751 Atomic orbital electron populations 1.70052 1.07621 1.28466 1.50472 1.25917 0.95897 1.03267 0.94004 0.85281 0.78614 0.78138 0.78255 1.19189 1.18941 1.20490 1.21710 0.93306 0.91888 1.52143 0.92922 1.18753 0.87472 0.83202 0.96043 1.48407 1.43949 1.33695 1.07533 1.21536 0.97454 0.95066 0.86720 1.23641 0.98730 1.01419 0.91266 0.80267 1.23106 0.90210 1.03723 0.97262 1.23006 1.02234 1.00254 0.98841 0.82817 1.20678 0.82035 0.83452 0.84083 1.90591 1.65197 1.68583 1.24345 0.92083 0.94999 0.98511 0.90523 0.88838 0.90401 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 15 2 C 0.01 0.50 5.46 84.66 0.46 0.96 15 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.26 -11.50 7.11 99.48 0.71 -10.80 15 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 7 C -0.55 -32.81 9.39 25.60 0.24 -32.57 15 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 15 9 C 0.27 14.95 5.63 85.63 0.48 15.43 15 10 N -0.61 -27.74 2.88 -826.89 -2.38 -30.12 15 11 C 0.11 3.61 7.17 86.68 0.62 4.23 15 12 C -0.13 -2.94 7.19 -10.25 -0.07 -3.01 15 13 H 0.18 2.29 8.14 -2.38 -0.02 2.27 15 14 C -0.11 -2.34 10.11 30.60 0.31 -2.03 15 15 C -0.22 -6.66 6.96 -11.24 -0.08 -6.74 15 16 H 0.15 3.87 8.14 -2.39 -0.02 3.85 15 17 C 0.51 23.54 7.83 87.82 0.69 24.23 15 18 O -0.60 -34.55 17.51 -3.04 -0.05 -34.61 15 19 H 0.27 15.29 8.31 -92.70 -0.77 14.52 15 20 H 0.03 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.00 -0.21 7.88 -2.39 -0.02 -0.23 15 22 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.16 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -76.86 225.25 3.70 -73.16 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.17 Total: -0.01 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 2.65 Total: 0.52 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.09 Total: -86.37 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -76.86 3.70 -73.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903447.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.712 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds