Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00351 * 2 1 4 4 H 1.48492 * 109.47219 * 239.99602 * 3 2 1 5 5 H 1.48500 * 109.46698 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47347 * 119.99455 * 3 2 1 7 7 C 1.37883 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99758 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.42786 * 57.47144 * 9 7 2 11 11 C 1.54739 * 110.47580 * 179.97438 * 9 7 2 12 12 C 1.54007 * 101.60218 * 143.01849 * 11 9 7 13 13 C 1.52475 * 120.86742 * 190.86199 * 12 11 9 14 14 C 1.52487 * 120.83993 * 119.28128 * 12 11 9 15 15 N 1.46242 * 106.12258 * 335.11795 * 12 11 9 16 16 C 1.34601 * 111.05279 * 16.46280 * 15 12 11 17 17 O 1.21279 * 124.93310 * 179.97438 * 16 15 12 18 18 H 0.97002 * 119.99306 * 0.02562 * 1 2 3 19 19 H 1.09005 * 111.00522 * 24.94067 * 11 9 7 20 20 H 1.09002 * 111.03730 * 261.10964 * 11 9 7 21 21 H 1.08998 * 117.50878 * 357.18303 * 13 12 11 22 22 H 1.08995 * 117.51282 * 142.27679 * 13 12 11 23 23 H 1.08998 * 117.51690 * 217.76293 * 14 12 11 24 24 H 1.09008 * 117.51181 * 2.82775 * 14 12 11 25 25 H 0.96994 * 124.47153 * 196.46170 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5854 -2.5542 -0.8609 11 6 2.2356 -3.6928 0.0005 12 6 1.5031 -4.6987 0.9080 13 6 2.2060 -5.9550 1.4105 14 6 1.0799 -6.0647 0.3790 15 7 0.6318 -3.9048 1.7737 16 6 0.4710 -2.6601 1.2873 17 8 -0.2014 -1.7937 1.8051 18 1 -0.4849 0.8401 -0.0004 19 1 3.1961 -3.4071 0.4296 20 1 2.3633 -4.0947 -1.0046 21 1 3.2242 -6.1344 1.0654 22 1 1.9899 -6.2799 2.4283 23 1 0.1232 -6.4619 0.7182 24 1 1.3570 -6.3161 -0.6449 25 1 0.2238 -4.2321 2.5905 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260916957.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = -8.051204 kcal Electronic energy + Delta-G solvation = -10896.663814 eV Core-core repulsion = 8875.981295 eV Total energy + Delta-G solvation = -2020.682519 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.34841 -36.34177 -33.15561 -32.22015 -30.02491 -25.37942 -22.80329 -22.11984 -19.78231 -19.27069 -16.21171 -15.96553 -14.91998 -14.49107 -14.14690 -13.56220 -12.38818 -12.26643 -11.83079 -11.73499 -11.37620 -11.29090 -10.77708 -10.66701 -10.29611 -10.01903 -9.38371 -9.14127 -8.40457 -8.16269 -7.84469 -5.89670 -3.98106 3.38453 3.43496 3.44800 3.98947 4.15038 4.37717 4.55248 5.02563 5.24837 5.32545 5.45466 5.83510 6.00113 6.09377 6.14931 6.33380 6.46431 6.61086 6.88303 7.52519 7.92633 7.95990 8.13679 8.36581 8.98300 9.65058 9.80270 11.16687 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.072072 B = 0.013296 C = 0.012125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.405586 B = 2105.399796 C = 2308.795214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.073 3.927 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.029 3.971 10 H 0.061 0.939 11 C -0.086 4.086 12 C 0.110 3.890 13 C -0.188 4.188 14 C -0.191 4.191 15 N -0.728 5.728 16 C 0.520 3.480 17 O -0.497 6.497 18 H 0.261 0.739 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -9.569 0.268 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.008 3.992 10 H 0.079 0.921 11 C -0.124 4.124 12 C 0.020 3.980 13 C -0.226 4.226 14 C -0.230 4.230 15 N -0.384 5.384 16 C 0.308 3.692 17 O -0.368 6.368 18 H 0.071 0.929 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.117 0.883 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.117 0.883 25 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.058 -8.824 0.443 9.350 hybrid contribution 0.208 0.491 0.551 0.766 sum 3.266 -8.334 0.994 9.006 Atomic orbital electron populations 1.70042 1.05818 1.26570 1.45182 1.25034 0.94789 0.99233 0.94372 0.86656 0.79579 0.83214 0.78472 1.20198 1.21288 1.20298 1.20676 0.92473 0.89031 1.55399 0.92023 1.19437 0.93417 0.93715 0.92660 0.92123 1.22170 0.98939 0.94392 0.96931 1.20869 0.95132 0.86593 0.95381 1.23193 0.97672 1.02764 0.98983 1.23337 0.98854 1.01787 0.99069 1.46174 1.52028 1.14234 1.25955 1.22300 0.79673 0.79223 0.87974 1.90642 1.39551 1.42877 1.63742 0.92948 0.90591 0.91268 0.88274 0.89246 0.89200 0.88329 0.78002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.91 11.22 55.43 0.62 -25.29 15 2 C 0.07 2.13 5.14 -17.82 -0.09 2.04 15 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.54 -15.10 8.51 -34.44 -0.29 -15.39 15 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 9 C 0.03 0.74 2.81 -91.70 -0.26 0.48 15 10 H 0.06 1.64 8.14 -51.93 -0.42 1.22 15 11 C -0.09 -1.69 6.43 -25.29 -0.16 -1.86 15 12 C 0.11 1.92 3.11 -131.96 -0.41 1.51 15 13 C -0.19 -2.53 10.39 -26.94 -0.28 -2.81 15 14 C -0.19 -2.67 10.38 -26.94 -0.28 -2.95 15 15 N -0.73 -14.91 6.24 -47.58 -0.30 -15.20 15 16 C 0.52 13.57 7.78 -10.76 -0.08 13.49 15 17 O -0.50 -15.12 15.56 5.56 0.09 -15.04 15 18 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 19 H 0.08 1.48 7.77 -51.93 -0.40 1.08 15 20 H 0.07 1.19 8.12 -51.93 -0.42 0.77 15 21 H 0.10 1.19 8.14 -51.93 -0.42 0.76 15 22 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.10 1.23 8.14 -51.92 -0.42 0.81 15 25 H 0.38 6.96 8.96 -40.82 -0.37 6.59 15 LS Contribution 219.90 15.07 3.31 3.31 Total: -1.00 -32.62 219.90 -5.99 -38.62 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.84 Total: 2.08 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.86 Total: -5.49 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.32 Total: -40.49 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.62 -5.99 -38.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916957.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.565 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds