Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46916 * 2 1 4 4 C 1.50703 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.29910 * 125.08273 * 89.99555 * 4 3 2 6 6 C 1.36274 * 108.62156 * 179.73422 * 5 4 3 7 7 C 1.41260 * 126.67792 * 179.97438 * 6 5 4 8 8 H 1.08010 * 119.99769 * 173.96134 * 7 6 5 9 9 C 1.39724 * 120.00277 * 353.95712 * 7 6 5 10 10 N 1.30995 * 120.00095 * 169.22835 * 9 7 6 11 11 Si 1.86798 * 119.99896 * 349.23763 * 9 7 6 12 12 H 1.48500 * 109.47427 * 84.67422 * 11 9 7 13 13 H 1.48497 * 109.47139 * 204.68064 * 11 9 7 14 14 H 1.48506 * 109.47068 * 324.67753 * 11 9 7 15 15 C 1.38799 * 106.64682 * 0.02562 * 6 5 4 16 16 O 1.34059 * 125.07594 * 269.69595 * 4 3 2 17 17 H 1.08997 * 109.47132 * 60.00293 * 1 2 3 18 18 H 1.09005 * 109.46663 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46936 * 300.00388 * 1 2 3 20 20 H 1.09002 * 109.47556 * 239.99834 * 2 1 3 21 21 H 1.08997 * 109.47132 * 119.99707 * 2 1 3 22 22 H 1.08996 * 109.47634 * 60.00040 * 3 2 1 23 23 H 1.09004 * 109.47185 * 299.99467 * 3 2 1 24 24 H 0.97001 * 119.99436 * 180.02562 * 10 9 7 25 25 H 1.07995 * 126.75049 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2932 1.4426 -1.0640 6 6 5.6003 1.4486 -0.6784 7 6 6.7301 1.4502 -1.5263 8 1 7.7200 1.5535 -1.1067 9 6 6.5672 1.3181 -2.9077 10 7 7.5810 1.5292 -3.7100 11 14 4.9036 0.8406 -3.6105 12 1 4.0639 2.0557 -3.7643 13 1 5.0922 0.1981 -4.9359 14 1 4.2322 -0.1118 -2.6898 15 6 5.6054 1.4516 0.7095 16 8 4.3179 1.4482 1.0962 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8935 -0.5139 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.6767 1.9564 0.8899 23 1 1.6767 1.9564 -0.8901 24 1 7.4677 1.4378 -4.6690 25 1 6.4730 1.4568 1.3525 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928079.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = -11.262038 kcal Electronic energy + Delta-G solvation = -10626.369106 eV Core-core repulsion = 8605.547354 eV Total energy + Delta-G solvation = -2020.821751 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.45640 -34.92548 -34.13840 -32.48482 -29.79760 -27.02742 -24.92580 -21.76721 -20.57189 -19.65007 -17.44621 -15.74671 -15.12941 -14.91345 -14.41744 -13.94117 -12.99039 -12.94954 -12.56500 -11.91690 -11.50877 -11.22160 -11.13389 -10.93322 -10.66474 -10.51975 -10.25830 -9.63781 -9.09832 -8.48101 -7.52609 -6.69149 -4.38650 2.76252 3.42110 3.43410 3.68326 4.01982 4.08029 4.42673 5.01965 5.18440 5.23439 5.38664 5.53659 5.75516 5.86369 5.92835 6.09027 6.30632 6.45126 6.70711 6.93549 7.22137 7.45544 7.58644 8.32063 8.62012 8.84757 9.31480 10.31823 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.047955 B = 0.015157 C = 0.011927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.738712 B = 1846.905901 C = 2347.059085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.016 4.016 4 C 0.168 3.832 5 N -0.519 5.519 6 C 0.155 3.845 7 C -0.434 4.434 8 H 0.093 0.907 9 C 0.085 3.915 10 N -0.828 5.828 11 Si 0.965 3.035 12 H -0.275 1.275 13 H -0.318 1.318 14 H -0.255 1.255 15 C -0.273 4.273 16 O -0.218 6.218 17 H 0.055 0.945 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.282 0.718 25 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 -1.862 4.394 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.055 4.055 4 C -0.038 4.038 5 N -0.258 5.258 6 C 0.040 3.960 7 C -0.466 4.466 8 H 0.111 0.889 9 C -0.132 4.132 10 N -0.455 5.455 11 Si 0.797 3.203 12 H -0.201 1.201 13 H -0.249 1.249 14 H -0.180 1.180 15 C -0.341 4.341 16 O -0.106 6.106 17 H 0.074 0.926 18 H 0.074 0.926 19 H 0.073 0.927 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.100 0.900 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.998 -1.830 3.671 11.738 hybrid contribution -0.016 -0.109 0.287 0.308 sum -11.015 -1.939 3.959 11.864 Atomic orbital electron populations 1.21755 0.95397 1.01655 1.01798 1.21525 0.95564 0.95903 1.03094 1.19905 0.83521 0.98283 1.03743 1.25479 0.95089 1.02767 0.80466 1.70047 1.03600 1.23149 1.29029 1.19587 0.89346 0.95812 0.91255 1.18421 0.92238 1.45691 0.90278 0.88870 1.26047 0.99591 0.90708 0.96894 1.69729 1.33269 1.37172 1.05299 0.85288 0.80583 0.80442 0.74036 1.20070 1.24893 1.17957 1.24398 0.82352 1.31863 0.95501 1.83973 1.17951 1.72522 1.36163 0.92556 0.92644 0.92690 0.91206 0.91639 0.90043 0.88915 0.90818 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 15 2 C -0.12 -1.78 5.92 -26.73 -0.16 -1.93 15 3 C -0.02 -0.27 5.84 -27.88 -0.16 -0.43 15 4 C 0.17 3.80 7.52 -13.09 -0.10 3.70 15 5 N -0.52 -13.67 6.61 -8.64 -0.06 -13.73 15 6 C 0.15 4.31 6.39 -84.54 -0.54 3.77 15 7 C -0.43 -12.76 9.94 -37.88 -0.38 -13.14 15 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 15 9 C 0.09 2.45 5.51 -17.35 -0.10 2.35 15 10 N -0.83 -23.84 13.94 55.54 0.77 -23.07 15 11 Si 0.97 24.69 25.79 -169.99 -4.38 20.30 15 12 H -0.27 -7.07 7.11 56.52 0.40 -6.67 15 13 H -0.32 -7.81 7.11 56.52 0.40 -7.41 15 14 H -0.25 -6.61 6.46 56.52 0.37 -6.25 15 15 C -0.27 -6.85 12.28 30.94 0.38 -6.47 15 16 O -0.22 -5.15 10.72 6.02 0.06 -5.09 15 17 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 18 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.28 7.43 8.30 -40.82 -0.34 7.09 15 25 H 0.19 4.14 8.06 -52.49 -0.42 3.72 15 LS Contribution 222.45 15.07 3.35 3.35 Total: -1.00 -31.54 222.45 -3.91 -35.45 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -2.98 Total: -3.82 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.68 Total: -13.39 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.72 Total: -36.80 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.06 Total: -5.09 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.38 Total: 20.30 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.54 -3.91 -35.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928079.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.187 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds