Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46652 * 2 1 4 4 C 1.50698 * 109.47488 * 239.99935 * 2 1 3 5 5 H 1.08000 * 120.00201 * 239.99937 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99840 * 4 2 1 7 7 N 1.31520 * 119.99919 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47581 * 59.99577 * 8 6 4 10 10 H 1.48500 * 109.47131 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46952 * 299.99573 * 8 6 4 12 12 C 1.53002 * 109.47431 * 119.99794 * 2 1 3 13 13 H 1.09000 * 115.55766 * 34.29708 * 12 2 1 14 14 C 1.53002 * 117.49773 * 248.61392 * 12 2 1 15 15 C 1.53000 * 60.02940 * 252.51785 * 14 12 2 16 16 H 1.08999 * 117.49959 * 252.49451 * 15 14 12 17 17 C 1.53008 * 117.49506 * 107.50086 * 15 14 12 18 18 C 1.53000 * 117.49392 * 180.13672 * 17 15 14 19 19 C 1.53001 * 117.49561 * 111.47909 * 17 15 14 20 20 H 1.08997 * 109.47382 * 60.00667 * 1 2 3 21 21 H 1.09005 * 109.46652 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47317 * 299.99651 * 1 2 3 23 23 H 0.96994 * 120.00203 * 179.97438 * 7 6 4 24 24 H 1.09002 * 117.49918 * 145.01819 * 14 12 2 25 25 H 1.09002 * 117.49754 * 0.02562 * 14 12 2 26 26 H 1.08997 * 115.55251 * 325.81092 * 17 15 14 27 27 H 1.08995 * 117.50475 * 0.02562 * 18 17 15 28 28 H 1.09000 * 117.49552 * 145.02650 * 18 17 15 29 29 H 1.08998 * 117.50112 * 214.97622 * 19 17 15 30 30 H 1.08997 * 117.50054 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6035 8 14 2.3215 -1.1203 -4.0079 9 1 1.8262 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7212 1.2493 13 1 1.4310 -1.5581 1.5907 14 6 2.7422 0.1227 2.3150 15 6 3.5558 -0.8278 1.4344 16 1 3.9440 -1.7348 1.8977 17 6 4.4450 -0.2049 0.3563 18 6 5.2562 -1.1555 -0.5264 19 6 5.9600 -0.3134 0.5406 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7087 1.1612 -3.4844 24 1 2.5950 -0.1590 3.3576 25 1 2.8403 1.1918 2.1263 26 1 4.0580 0.7036 -0.1053 27 1 5.1561 -2.2247 -0.3394 28 1 5.4032 -0.8723 -1.5687 29 1 6.5697 0.5234 0.2000 30 1 6.3232 -0.8281 1.4301 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 33.261619 kcal Electronic energy + Delta-G solvation = -11039.832043 eV Core-core repulsion = 9222.199987 eV Total energy + Delta-G solvation = -1817.632055 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.08354 -34.99825 -32.95639 -29.74627 -25.07703 -22.95560 -22.11708 -21.60282 -20.07679 -18.05625 -16.00836 -15.12620 -14.74359 -14.14024 -13.20596 -12.62290 -12.43273 -11.54392 -11.36956 -11.03889 -10.81484 -10.78048 -10.52563 -10.42795 -10.07528 -9.98480 -9.82998 -9.33056 -9.09237 -8.61100 -8.23402 -8.22412 -5.87514 -3.90174 3.36528 3.41507 3.44164 4.35061 4.52492 4.99496 5.29193 5.42753 5.62769 5.71996 5.82618 6.06510 6.15454 6.18405 6.23676 6.38051 6.54178 6.72669 6.75199 6.91244 6.95144 7.01814 7.19795 7.35939 7.47446 7.84855 8.07821 8.24494 8.59221 9.12649 9.72140 11.18821 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.018768 C = 0.013222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.963527 B = 1491.514049 C = 2117.101456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 H 0.025 0.975 4 C -0.488 4.488 5 H 0.059 0.941 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.278 1.278 12 C -0.112 4.112 13 H 0.083 0.917 14 C -0.193 4.193 15 C -0.120 4.120 16 H 0.084 0.916 17 C -0.077 4.077 18 C -0.166 4.166 19 C -0.205 4.205 20 H 0.082 0.918 21 H 0.023 0.977 22 H 0.006 0.994 23 H 0.257 0.743 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -1.929 5.188 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.043 0.957 4 C -0.527 4.527 5 H 0.077 0.923 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.712 3.288 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 C -0.131 4.131 13 H 0.102 0.898 14 C -0.230 4.230 15 C -0.138 4.138 16 H 0.102 0.898 17 C -0.095 4.095 18 C -0.203 4.203 19 C -0.242 4.242 20 H 0.100 0.900 21 H 0.042 0.958 22 H 0.025 0.975 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.840 -1.816 5.042 7.221 hybrid contribution 0.332 -0.547 -0.898 1.103 sum 5.172 -2.363 4.144 7.036 Atomic orbital electron populations 1.21782 0.98829 0.98788 0.99922 1.18313 0.92124 0.94911 0.89422 0.95660 1.21144 1.29643 1.11993 0.89890 0.92269 1.24933 0.95486 0.95130 0.98709 1.69880 1.37475 1.23311 1.23035 0.86791 0.79234 0.79844 0.82913 1.20502 1.21632 1.20325 1.22697 0.92382 1.00031 0.97947 0.89846 1.23048 1.07079 0.97597 0.95292 1.21578 0.94182 0.98922 0.99138 0.89814 1.21474 0.89056 1.00938 0.98008 1.22711 1.04642 0.97033 0.95947 1.23020 0.96859 1.03224 1.01055 0.89977 0.95761 0.97538 0.93269 0.90525 0.89480 0.87041 0.89805 0.89386 0.89846 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.95 37.16 0.33 -2.99 16 2 C 0.07 1.75 1.80 -91.77 -0.17 1.59 16 3 H 0.03 0.68 7.40 -51.93 -0.38 0.30 16 4 C -0.49 -13.01 6.74 -34.44 -0.23 -13.24 16 5 H 0.06 1.57 6.70 -52.49 -0.35 1.22 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.11 16 8 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.11 -2.37 5.10 -90.58 -0.46 -2.83 16 13 H 0.08 1.71 8.11 -51.93 -0.42 1.29 16 14 C -0.19 -3.54 9.89 -26.73 -0.26 -3.80 16 15 C -0.12 -2.30 5.67 -90.58 -0.51 -2.81 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 17 C -0.08 -1.50 3.82 -90.61 -0.35 -1.85 16 18 C -0.17 -3.08 9.49 -26.69 -0.25 -3.34 16 19 C -0.20 -3.37 10.25 -26.69 -0.27 -3.64 16 20 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.62 8.05 -51.93 -0.42 1.20 16 26 H 0.11 2.48 7.02 -51.93 -0.36 2.12 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 246.00 15.07 3.71 3.71 Total: -1.00 -27.39 246.00 -7.73 -35.12 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.77 Total: 1.31 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -2.27 Total: -31.44 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.63 Total: -25.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.39 -7.73 -35.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.380 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds