Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46652 * 2 1 4 4 C 1.50698 * 109.47488 * 239.99935 * 2 1 3 5 5 H 1.08000 * 120.00201 * 239.99937 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99840 * 4 2 1 7 7 N 1.31520 * 119.99919 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47581 * 59.99577 * 8 6 4 10 10 H 1.48500 * 109.47131 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46952 * 299.99573 * 8 6 4 12 12 C 1.53002 * 109.47431 * 119.99794 * 2 1 3 13 13 H 1.09000 * 115.55766 * 34.29708 * 12 2 1 14 14 C 1.53002 * 117.49773 * 248.61392 * 12 2 1 15 15 C 1.53000 * 60.02940 * 252.51785 * 14 12 2 16 16 H 1.08999 * 117.49959 * 252.49451 * 15 14 12 17 17 C 1.53008 * 117.49506 * 107.50086 * 15 14 12 18 18 C 1.53000 * 117.49392 * 180.13672 * 17 15 14 19 19 C 1.53001 * 117.49561 * 111.47909 * 17 15 14 20 20 H 1.08997 * 109.47382 * 60.00667 * 1 2 3 21 21 H 1.09005 * 109.46652 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47317 * 299.99651 * 1 2 3 23 23 H 0.96994 * 120.00203 * 179.97438 * 7 6 4 24 24 H 1.09002 * 117.49918 * 145.01819 * 14 12 2 25 25 H 1.09002 * 117.49754 * 0.02562 * 14 12 2 26 26 H 1.08997 * 115.55251 * 325.81092 * 17 15 14 27 27 H 1.08995 * 117.50475 * 0.02562 * 18 17 15 28 28 H 1.09000 * 117.49552 * 145.02650 * 18 17 15 29 29 H 1.08998 * 117.50112 * 214.97622 * 19 17 15 30 30 H 1.08997 * 117.50054 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6035 8 14 2.3215 -1.1203 -4.0079 9 1 1.8262 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7212 1.2493 13 1 1.4310 -1.5581 1.5907 14 6 2.7422 0.1227 2.3150 15 6 3.5558 -0.8278 1.4344 16 1 3.9440 -1.7348 1.8977 17 6 4.4450 -0.2049 0.3563 18 6 5.2562 -1.1555 -0.5264 19 6 5.9600 -0.3134 0.5406 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7087 1.1612 -3.4844 24 1 2.5950 -0.1590 3.3576 25 1 2.8403 1.1918 2.1263 26 1 4.0580 0.7036 -0.1053 27 1 5.1561 -2.2247 -0.3394 28 1 5.4032 -0.8723 -1.5687 29 1 6.5697 0.5234 0.2000 30 1 6.3232 -0.8281 1.4301 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 19.957358 kcal Electronic energy + Delta-G solvation = -11040.408959 eV Core-core repulsion = 9222.199987 eV Total energy + Delta-G solvation = -1818.208971 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65078 -36.59161 -34.88715 -31.72711 -27.15296 -24.48464 -23.89071 -23.03400 -21.68533 -19.74923 -18.07403 -16.65088 -16.61251 -15.78238 -14.83487 -14.57674 -14.08013 -13.37075 -13.15928 -12.84046 -12.70054 -12.35026 -12.27898 -12.13492 -11.90188 -11.60225 -11.53704 -11.08458 -10.90238 -10.38053 -10.26666 -9.84732 -7.98139 -6.05853 1.42671 1.42899 1.49722 2.48295 2.89026 3.30282 3.50176 3.83352 4.15004 4.23950 4.35985 4.55732 4.67625 4.72799 4.83556 4.87322 5.01181 5.04202 5.11461 5.17167 5.38272 5.45398 5.47825 5.52579 5.68723 5.74131 6.06062 6.20623 6.52386 7.03173 7.59018 9.07148 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.018768 C = 0.013222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.963527 B = 1491.514049 C = 2117.101456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.071 3.929 3 H -0.007 1.007 4 C -0.486 4.486 5 H 0.058 0.942 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.937 3.063 9 H -0.274 1.274 10 H -0.292 1.292 11 H -0.270 1.270 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.172 4.172 15 C -0.111 4.111 16 H 0.107 0.893 17 C -0.104 4.104 18 C -0.177 4.177 19 C -0.169 4.169 20 H 0.053 0.947 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.255 0.745 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -3.080 6.401 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.011 0.989 4 C -0.524 4.524 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.569 5.569 8 Si 0.764 3.236 9 H -0.199 1.199 10 H -0.218 1.218 11 H -0.196 1.196 12 C -0.157 4.157 13 H 0.110 0.890 14 C -0.209 4.209 15 C -0.129 4.129 16 H 0.125 0.875 17 C -0.122 4.122 18 C -0.214 4.214 19 C -0.206 4.206 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.127 0.873 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.161 -2.975 6.262 9.274 hybrid contribution -0.072 -0.154 -1.254 1.265 sum 6.089 -3.129 5.008 8.482 Atomic orbital electron populations 1.21660 0.98870 0.98707 0.99430 1.18193 0.92107 0.93402 0.91045 0.98941 1.21393 1.28747 1.11547 0.90714 0.92368 1.25623 0.95978 0.95876 1.01459 1.70022 1.38895 1.24748 1.23262 0.85919 0.79007 0.78888 0.79739 1.19924 1.21830 1.19567 1.22496 0.94266 1.01242 0.97724 0.89038 1.23080 1.04757 0.96853 0.96232 1.21660 0.92491 0.99884 0.98898 0.87461 1.21346 0.91516 1.00118 0.99204 1.22732 1.05370 0.97560 0.95717 1.23083 0.94209 1.02555 1.00717 0.92850 0.95469 0.95607 0.93623 0.87269 0.90423 0.90855 0.88874 0.90882 0.88702 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.95 71.98 0.64 -5.73 16 2 C 0.07 3.55 1.80 -11.54 -0.02 3.53 16 3 H -0.01 -0.42 7.40 -2.38 -0.02 -0.44 16 4 C -0.49 -26.09 6.74 25.60 0.17 -25.91 16 5 H 0.06 3.08 6.70 -2.91 -0.02 3.06 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.93 -54.64 11.32 21.45 0.24 -54.40 16 8 Si 0.94 44.27 29.54 68.60 2.03 46.30 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C -0.14 -5.68 5.10 -10.77 -0.05 -5.74 16 13 H 0.09 3.57 8.11 -2.39 -0.02 3.55 16 14 C -0.17 -5.89 9.89 30.60 0.30 -5.59 16 15 C -0.11 -4.00 5.67 -10.77 -0.06 -4.06 16 16 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 17 C -0.10 -3.94 3.82 -10.79 -0.04 -3.98 16 18 C -0.18 -6.26 9.49 30.62 0.29 -5.97 16 19 C -0.17 -5.04 10.25 30.62 0.31 -4.73 16 20 H 0.05 2.94 6.07 -2.39 -0.01 2.93 16 21 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.08 2.80 8.05 -2.39 -0.02 2.78 16 26 H 0.07 3.35 7.02 -2.39 -0.02 3.33 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -58.65 246.00 5.35 -53.30 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.09 Total: 12.14 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 1.99 Total: -57.34 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.24 Total: -54.40 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -58.65 5.35 -53.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.256 kcal (2) G-P(sol) polarization free energy of solvation -58.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds