Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46683 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47093 * 299.99608 * 3 2 1 6 6 H 1.48500 * 109.47057 * 59.99972 * 3 2 1 7 7 C 1.37878 * 119.99394 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.08997 * 115.53132 * 34.48235 * 9 7 2 11 11 C 1.53008 * 117.46762 * 179.97438 * 9 7 2 12 12 H 1.09002 * 118.09617 * 215.52835 * 11 9 7 13 13 C 1.53675 * 117.07632 * 1.59220 * 11 9 7 14 14 C 1.52695 * 108.94684 * 142.03105 * 13 11 9 15 15 C 1.51579 * 111.46790 * 268.95696 * 14 13 11 16 16 C 1.51589 * 113.22323 * 67.22596 * 15 14 13 17 17 C 1.52687 * 111.46655 * 292.75928 * 16 15 14 18 18 C 1.53679 * 108.94521 * 91.06082 * 17 16 15 19 19 H 1.09006 * 115.53542 * 70.59204 * 18 17 16 20 20 H 0.97003 * 119.99412 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.55829 * 261.86869 * 13 11 9 22 22 H 1.08995 * 109.55963 * 22.08604 * 13 11 9 23 23 H 1.09002 * 109.08099 * 29.47160 * 14 13 11 24 24 H 1.09000 * 109.07958 * 148.51057 * 14 13 11 25 25 H 1.08995 * 108.73262 * 188.19122 * 15 14 13 26 26 H 1.09000 * 108.73361 * 306.26162 * 15 14 13 27 27 H 1.08995 * 109.07970 * 53.26927 * 16 15 14 28 28 H 1.08994 * 109.07880 * 172.24553 * 16 15 14 29 29 H 1.09004 * 109.55697 * 210.89742 * 17 16 15 30 30 H 1.08997 * 109.56529 * 331.21692 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.3141 -2.5006 -0.5567 11 6 2.0736 -3.7892 0.0005 12 1 1.6899 -4.6428 -0.5582 13 6 3.6030 -3.6435 0.0386 14 6 4.1839 -4.7430 0.9246 15 6 4.3100 -4.2865 2.3645 16 6 2.9716 -4.0575 3.0384 17 6 2.2339 -2.8690 2.4263 18 6 1.3375 -3.3726 1.2841 19 1 0.4687 -3.9551 1.5906 20 1 -0.4849 0.8401 -0.0004 21 1 4.0038 -3.7383 -0.9707 22 1 3.8665 -2.6673 0.4456 23 1 3.5320 -5.6156 0.8832 24 1 5.1704 -5.0175 0.5511 25 1 4.8591 -5.0431 2.9248 26 1 4.8776 -3.3562 2.3884 27 1 2.3592 -4.9523 2.9276 28 1 3.1346 -3.8677 4.0992 29 1 1.6193 -2.3893 3.1881 30 1 2.9566 -2.1532 2.0345 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = -3.475539 kcal Electronic energy + Delta-G solvation = -11156.240569 eV Core-core repulsion = 9337.015471 eV Total energy + Delta-G solvation = -1819.225098 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.31459 -33.94695 -31.93654 -30.98271 -26.09124 -25.04931 -23.19151 -19.83874 -19.52637 -17.77802 -16.11249 -14.91991 -14.67175 -13.99168 -13.61805 -12.97776 -12.40254 -12.10151 -11.61758 -11.27262 -10.99526 -10.86559 -10.64959 -10.34131 -10.19446 -10.00905 -9.72502 -9.54287 -9.05703 -8.76370 -8.12664 -7.96297 -6.04588 -4.00994 3.28600 3.37133 3.40512 4.41516 5.03584 5.32173 5.46957 5.49262 5.64454 6.00838 6.06822 6.16393 6.25923 6.32228 6.47620 6.52151 6.61113 6.69659 6.74169 6.85168 6.96438 6.98795 7.10954 7.24689 7.30652 7.63514 7.73332 7.94461 8.51743 8.99602 9.57334 11.06406 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.050688 B = 0.013726 C = 0.013249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.271144 B = 2039.486683 C = 2112.841005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.064 0.936 9 C 0.042 3.958 10 H 0.073 0.927 11 C -0.184 4.184 12 H 0.072 0.928 13 C -0.084 4.084 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.073 4.073 18 C -0.187 4.187 19 H 0.069 0.931 20 H 0.260 0.740 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.790 -5.643 3.003 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.521 4.521 8 H 0.082 0.918 9 C 0.023 3.977 10 H 0.091 0.909 11 C -0.202 4.202 12 H 0.090 0.910 13 C -0.121 4.121 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.111 4.111 18 C -0.206 4.206 19 H 0.088 0.912 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.643 -5.518 3.006 8.446 hybrid contribution 0.289 0.710 0.084 0.771 sum 5.932 -4.808 3.091 8.237 Atomic orbital electron populations 1.69987 1.06090 1.26546 1.49724 1.25042 0.94798 0.99188 0.94693 0.86570 0.80241 0.83812 0.77641 1.19587 1.20963 1.20954 1.20706 0.92677 0.89207 1.49503 0.91766 1.20402 0.96002 0.88312 0.92956 0.90871 1.22648 0.93447 1.01408 1.02738 0.91018 1.21195 0.94273 0.98938 0.97692 1.21209 0.99296 0.99309 0.95163 1.21001 0.97467 1.00331 0.96019 1.21250 0.96178 0.99801 0.97955 1.21000 0.97949 0.95977 0.96149 1.23085 0.99253 1.08024 0.90229 0.91229 0.92991 0.93538 0.90261 0.92859 0.93642 0.93757 0.92745 0.92971 0.93668 0.93544 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.13 55.43 0.73 -25.15 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.48 -13.11 7.11 -34.44 -0.24 -13.36 16 8 H 0.06 1.71 5.72 -52.49 -0.30 1.41 16 9 C 0.04 1.07 5.66 -90.44 -0.51 0.56 16 10 H 0.07 2.04 7.90 -51.93 -0.41 1.63 16 11 C -0.18 -3.99 5.58 -89.89 -0.50 -4.49 16 12 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.08 -1.64 5.04 -26.54 -0.13 -1.78 16 14 C -0.11 -1.86 5.59 -27.61 -0.15 -2.01 16 15 C -0.11 -1.77 5.28 -28.16 -0.15 -1.92 16 16 C -0.11 -1.96 5.59 -27.61 -0.15 -2.11 16 17 C -0.07 -1.53 5.16 -26.54 -0.14 -1.67 16 18 C -0.19 -4.22 5.75 -88.57 -0.51 -4.73 16 19 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.08 1.69 4.08 -51.93 -0.21 1.48 16 23 H 0.05 0.88 7.79 -51.93 -0.40 0.47 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 27 H 0.05 0.89 7.78 -51.93 -0.40 0.48 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.71 4.99 -51.93 -0.26 1.45 16 LS Contribution 231.67 15.07 3.49 3.49 Total: -1.00 -27.83 231.67 -7.89 -35.72 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.49 Total: -0.39 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -2.59 Total: -29.79 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.73 Total: -25.15 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.83 -7.89 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.243 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds