Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 112.78174 * 2 1 4 4 C 1.53814 * 113.51985 * 130.91497 * 2 1 3 5 5 H 1.08997 * 115.62907 * 208.36111 * 4 2 1 6 6 C 1.54118 * 113.09758 * 344.07927 * 4 2 1 7 7 C 1.54241 * 106.56132 * 93.75433 * 6 4 2 8 8 C 1.54874 * 104.32123 * 336.52546 * 7 6 4 9 9 C 1.54679 * 102.82862 * 37.98040 * 8 7 6 10 10 H 1.09000 * 114.99091 * 90.78870 * 9 8 7 11 11 C 1.53515 * 113.41022 * 228.76040 * 9 8 7 12 12 H 1.09000 * 113.52996 * 194.95275 * 11 9 8 13 13 C 1.50704 * 113.52983 * 325.58317 * 11 9 8 14 14 H 1.08001 * 119.99298 * 0.02562 * 13 11 9 15 15 C 1.37867 * 120.00198 * 180.02562 * 13 11 9 16 16 N 1.31520 * 119.99872 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00249 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47282 * 119.99689 * 17 15 13 20 20 H 1.48501 * 109.46988 * 240.00194 * 17 15 13 21 21 H 1.08997 * 109.47743 * 258.05944 * 1 2 3 22 22 H 1.09004 * 109.47119 * 18.06593 * 1 2 3 23 23 H 1.09004 * 109.47088 * 138.05804 * 1 2 3 24 24 H 1.09005 * 109.99405 * 334.52516 * 6 4 2 25 25 H 1.09000 * 110.14419 * 213.06442 * 6 4 2 26 26 H 1.08998 * 110.48175 * 217.77675 * 7 6 4 27 27 H 1.09001 * 110.48593 * 95.27249 * 7 6 4 28 28 H 1.08995 * 110.74302 * 156.31874 * 8 7 6 29 29 H 1.08997 * 110.74049 * 279.46760 * 8 7 6 30 30 H 0.97002 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1438 -0.9237 1.0658 5 1 3.1249 -0.6280 1.4374 6 6 1.1351 -1.3492 2.1505 7 6 0.5453 -2.7002 1.6967 8 6 0.7471 -2.7099 0.1612 9 6 2.1306 -2.0391 -0.0076 10 1 2.9778 -2.7249 -0.0085 11 6 2.1432 -0.9243 -1.0629 12 1 3.1459 -0.6281 -1.3710 13 6 1.2274 -1.1900 -2.2299 14 1 0.6431 -2.0978 -2.2619 15 6 1.1355 -0.2745 -3.2565 16 7 1.8474 0.8307 -3.2177 17 14 -0.0002 -0.6035 -4.7027 18 1 -0.6843 -1.9071 -4.5082 19 1 -1.0128 0.4788 -4.7932 20 1 0.7943 -0.6444 -5.9567 21 1 -0.3634 -0.2126 1.0054 22 1 -0.3633 0.9770 -0.3187 23 1 -0.3633 -0.7644 -0.6869 24 1 0.3426 -0.6055 2.2349 25 1 1.6413 -1.4660 3.1087 26 1 -0.5152 -2.7553 1.9425 27 1 1.0862 -3.5267 2.1577 28 1 0.7641 -3.7311 -0.2195 29 1 -0.0302 -2.1278 -0.3339 30 1 1.7825 1.4751 -3.9399 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = 17.499076 kcal Electronic energy + Delta-G solvation = -11443.306523 eV Core-core repulsion = 9624.990953 eV Total energy + Delta-G solvation = -1818.315570 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.87313 -33.06552 -31.33137 -28.81788 -27.59613 -25.39329 -22.50859 -20.85830 -19.15150 -16.93687 -15.72808 -15.60362 -14.67454 -14.21755 -13.45726 -12.70202 -12.30836 -11.40196 -11.33333 -11.15635 -10.92934 -10.62141 -10.44977 -10.30013 -10.16262 -10.14596 -9.51152 -9.37249 -8.99941 -8.46936 -8.35154 -8.15104 -5.93700 -3.94047 3.32496 3.41186 3.44225 4.49343 5.25361 5.39316 5.46098 5.51414 6.02109 6.11858 6.23494 6.31400 6.36689 6.43063 6.47282 6.59906 6.65033 6.82069 6.87292 6.96440 7.08692 7.11930 7.24743 7.50309 7.67387 7.81980 7.97377 8.09782 8.55897 9.07337 9.68188 11.16419 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.061552 B = 0.014942 C = 0.014034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.794158 B = 1873.447173 C = 1994.634108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 H 0.049 0.951 4 C -0.127 4.127 5 H 0.074 0.926 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.113 4.113 10 H 0.056 0.944 11 C 0.051 3.949 12 H 0.046 0.954 13 C -0.498 4.498 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.881 3.119 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -3.565 6.839 8.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.067 0.933 4 C -0.145 4.145 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.132 4.132 10 H 0.074 0.926 11 C 0.032 3.968 12 H 0.064 0.936 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.709 3.291 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.212 1.212 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.161 -3.402 6.740 7.852 hybrid contribution -0.436 0.003 -0.794 0.905 sum -2.596 -3.399 5.946 7.325 Atomic orbital electron populations 1.21959 0.95655 1.01361 0.99792 1.22211 0.95143 0.97120 0.96634 0.93270 1.23440 0.97435 0.99765 0.93887 0.90736 1.22239 0.98928 0.97094 0.97429 1.22379 0.99111 0.96835 0.97596 1.22649 0.99070 0.99623 0.93879 1.23341 0.95680 0.95511 0.98619 0.92563 1.19837 0.96647 0.89578 0.90720 0.93580 1.21062 1.23993 1.04693 1.03841 0.92262 1.24988 0.95680 0.95328 0.97757 1.69983 1.40597 1.09548 1.32638 0.86712 0.81012 0.78237 0.83130 1.19735 1.21160 1.21180 0.94116 0.94958 0.89900 0.91193 0.93799 0.92959 0.93090 0.93595 0.88247 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.03 37.16 0.30 -2.52 16 2 C -0.09 -2.10 4.39 -89.87 -0.39 -2.50 16 3 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -2.51 4.91 -88.66 -0.44 -2.95 16 5 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 6 C -0.12 -2.04 5.90 -25.50 -0.15 -2.19 16 7 C -0.12 -2.00 6.69 -25.09 -0.17 -2.17 16 8 C -0.12 -2.23 5.07 -24.86 -0.13 -2.36 16 9 C -0.11 -2.40 4.81 -88.52 -0.43 -2.83 16 10 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 11 C 0.05 1.27 3.36 -91.18 -0.31 0.96 16 12 H 0.05 1.28 8.13 -51.93 -0.42 0.85 16 13 C -0.50 -13.35 6.16 -34.44 -0.21 -13.57 16 14 H 0.06 1.57 6.58 -52.49 -0.35 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.92 13.28 55.43 0.74 -25.18 16 17 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H 0.04 0.76 4.80 -51.93 -0.25 0.51 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.88 4.03 -51.93 -0.21 1.67 16 24 H 0.07 1.18 5.52 -51.93 -0.29 0.89 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 2.08 3.63 -51.93 -0.19 1.89 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 225.05 15.07 3.39 3.39 Total: -1.00 -27.86 225.05 -7.13 -34.99 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.22 Total: -0.99 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.02 Total: -28.44 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.74 Total: -25.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.86 -7.13 -34.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.493 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds