Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 112.78174 * 2 1 4 4 C 1.53814 * 113.51985 * 130.91497 * 2 1 3 5 5 H 1.08997 * 115.62907 * 208.36111 * 4 2 1 6 6 C 1.54118 * 113.09758 * 344.07927 * 4 2 1 7 7 C 1.54241 * 106.56132 * 93.75433 * 6 4 2 8 8 C 1.54874 * 104.32123 * 336.52546 * 7 6 4 9 9 C 1.54679 * 102.82862 * 37.98040 * 8 7 6 10 10 H 1.09000 * 114.99091 * 90.78870 * 9 8 7 11 11 C 1.53515 * 113.41022 * 228.76040 * 9 8 7 12 12 H 1.09000 * 113.52996 * 194.95275 * 11 9 8 13 13 C 1.50704 * 113.52983 * 325.58317 * 11 9 8 14 14 H 1.08001 * 119.99298 * 0.02562 * 13 11 9 15 15 C 1.37867 * 120.00198 * 180.02562 * 13 11 9 16 16 N 1.31520 * 119.99872 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00249 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47282 * 119.99689 * 17 15 13 20 20 H 1.48501 * 109.46988 * 240.00194 * 17 15 13 21 21 H 1.08997 * 109.47743 * 258.05944 * 1 2 3 22 22 H 1.09004 * 109.47119 * 18.06593 * 1 2 3 23 23 H 1.09004 * 109.47088 * 138.05804 * 1 2 3 24 24 H 1.09005 * 109.99405 * 334.52516 * 6 4 2 25 25 H 1.09000 * 110.14419 * 213.06442 * 6 4 2 26 26 H 1.08998 * 110.48175 * 217.77675 * 7 6 4 27 27 H 1.09001 * 110.48593 * 95.27249 * 7 6 4 28 28 H 1.08995 * 110.74302 * 156.31874 * 8 7 6 29 29 H 1.08997 * 110.74049 * 279.46760 * 8 7 6 30 30 H 0.97002 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1438 -0.9237 1.0658 5 1 3.1249 -0.6280 1.4374 6 6 1.1351 -1.3492 2.1505 7 6 0.5453 -2.7002 1.6967 8 6 0.7471 -2.7099 0.1612 9 6 2.1306 -2.0391 -0.0076 10 1 2.9778 -2.7249 -0.0085 11 6 2.1432 -0.9243 -1.0629 12 1 3.1459 -0.6281 -1.3710 13 6 1.2274 -1.1900 -2.2299 14 1 0.6431 -2.0978 -2.2619 15 6 1.1355 -0.2745 -3.2565 16 7 1.8474 0.8307 -3.2177 17 14 -0.0002 -0.6035 -4.7027 18 1 -0.6843 -1.9071 -4.5082 19 1 -1.0128 0.4788 -4.7932 20 1 0.7943 -0.6444 -5.9567 21 1 -0.3634 -0.2126 1.0054 22 1 -0.3633 0.9770 -0.3187 23 1 -0.3633 -0.7644 -0.6869 24 1 0.3426 -0.6055 2.2349 25 1 1.6413 -1.4660 3.1087 26 1 -0.5152 -2.7553 1.9425 27 1 1.0862 -3.5267 2.1577 28 1 0.7641 -3.7311 -0.2195 29 1 -0.0302 -2.1278 -0.3339 30 1 1.7825 1.4751 -3.9399 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = 2.628099 kcal Electronic energy + Delta-G solvation = -11443.951377 eV Core-core repulsion = 9624.990953 eV Total energy + Delta-G solvation = -1818.960424 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.55115 -34.95571 -33.09944 -30.50989 -29.27212 -27.32182 -24.18788 -22.62165 -20.73460 -18.70786 -17.63012 -17.36970 -16.54140 -15.81193 -15.12404 -14.38070 -14.11603 -13.28644 -13.08417 -12.93228 -12.73206 -12.41325 -12.05960 -12.01988 -11.80620 -11.71606 -11.13062 -10.93406 -10.83398 -10.52651 -10.19045 -10.03929 -8.05812 -6.11479 1.40154 1.42879 1.53220 2.46688 3.24189 3.75325 3.99058 4.00527 4.47245 4.56526 4.67396 4.71374 4.83557 4.91919 4.97920 5.02643 5.08925 5.20916 5.32848 5.36475 5.47124 5.48919 5.63504 5.70960 5.74091 5.94607 6.07450 6.19025 6.48527 6.96972 7.53728 9.04731 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.061552 B = 0.014942 C = 0.014034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.794158 B = 1873.447173 C = 1994.634108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.096 4.096 3 H 0.020 0.980 4 C -0.115 4.115 5 H 0.079 0.921 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.112 4.112 10 H 0.060 0.940 11 C 0.028 3.972 12 H 0.003 0.997 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.943 3.057 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.286 1.286 21 H 0.074 0.926 22 H 0.017 0.983 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -4.982 8.307 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 H 0.038 0.962 4 C -0.133 4.133 5 H 0.098 0.902 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.131 4.131 10 H 0.078 0.922 11 C 0.009 3.991 12 H 0.022 0.978 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.569 5.569 17 Si 0.769 3.231 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.212 1.212 21 H 0.093 0.907 22 H 0.036 0.964 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.454 -4.837 8.216 10.140 hybrid contribution 0.036 0.441 -1.260 1.336 sum -3.418 -4.395 6.956 8.910 Atomic orbital electron populations 1.21895 0.94348 1.00174 1.01525 1.22166 0.96207 0.95653 0.97456 0.96175 1.23353 0.98394 0.97418 0.94175 0.90239 1.22215 0.98220 0.97427 0.97315 1.22348 1.00834 0.97022 0.94768 1.22610 0.96878 0.99338 0.96531 1.23312 0.97380 0.95277 0.97097 0.92167 1.19860 0.94402 0.92916 0.91908 0.97829 1.21346 1.23517 1.04306 1.04275 0.91994 1.25743 0.97269 0.95227 1.00529 1.70123 1.42561 1.10672 1.33577 0.85725 0.79098 0.78464 0.79775 1.18468 1.21000 1.21246 0.90735 0.96373 0.90966 0.90757 0.91116 0.90765 0.91234 0.92921 0.89874 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.03 71.98 0.58 -4.61 16 2 C -0.10 -4.40 4.39 -10.31 -0.05 -4.45 16 3 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -4.36 4.91 -9.52 -0.05 -4.41 16 5 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 6 C -0.11 -3.42 5.90 31.39 0.19 -3.24 16 7 C -0.11 -3.18 6.69 31.65 0.21 -2.97 16 8 C -0.12 -4.21 5.07 31.81 0.16 -4.05 16 9 C -0.11 -4.65 4.81 -9.43 -0.05 -4.69 16 10 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 11 C 0.03 1.42 3.36 -11.16 -0.04 1.38 16 12 H 0.00 0.20 8.13 -2.39 -0.02 0.19 16 13 C -0.50 -26.96 6.16 25.60 0.16 -26.80 16 14 H 0.06 3.26 6.58 -2.91 -0.02 3.24 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -55.95 13.28 21.44 0.28 -55.66 16 17 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H 0.07 2.59 4.80 -2.39 -0.01 2.58 16 22 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.07 3.22 4.03 -2.39 -0.01 3.21 16 24 H 0.07 2.17 5.52 -2.38 -0.01 2.16 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 3.31 3.63 -2.39 -0.01 3.30 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -60.53 225.05 5.01 -55.53 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.11 Total: 6.89 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 1.58 Total: -52.82 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -60.53 5.01 -55.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.157 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds