Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47039 * 30.00183 * 3 2 1 6 6 H 1.48502 * 109.46906 * 150.00089 * 3 2 1 7 7 C 1.40217 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.41261 * 119.99908 * 359.72287 * 7 2 1 10 10 N 1.30636 * 123.22232 * 180.27726 * 9 7 2 11 11 C 1.47586 * 108.33683 * 180.58765 * 10 9 7 12 12 H 1.09001 * 110.90620 * 256.78623 * 11 10 9 13 13 C 1.52997 * 110.90295 * 133.18978 * 11 10 9 14 14 C 1.53003 * 117.49922 * 130.07384 * 13 11 10 15 15 C 1.52998 * 60.00010 * 252.51408 * 14 13 11 16 16 C 1.54784 * 102.10528 * 14.99189 * 11 10 9 17 17 O 1.35193 * 123.22613 * 359.97438 * 9 7 2 18 18 H 0.96995 * 119.99874 * 0.02562 * 1 2 3 19 19 H 1.09000 * 115.55286 * 275.78511 * 13 11 10 20 20 H 1.09001 * 117.49381 * 0.02562 * 14 13 11 21 21 H 1.09001 * 117.49407 * 145.01659 * 14 13 11 22 22 H 1.09003 * 117.49600 * 252.50939 * 15 14 13 23 23 H 1.09002 * 117.49921 * 107.49291 * 15 14 13 24 24 H 1.08995 * 111.02245 * 94.38295 * 16 11 10 25 25 H 1.09002 * 111.01736 * 218.23400 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4876 2.0464 -1.4001 5 1 1.4376 2.6526 0.7001 6 1 3.5376 1.4401 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2144 -0.0001 9 6 1.3008 -2.4377 0.0048 10 7 1.8893 -3.6039 0.0099 11 6 0.8478 -4.6496 0.0002 12 1 0.7292 -5.0897 0.9903 13 6 1.1652 -5.7264 -1.0393 14 6 1.1125 -7.1860 -0.5832 15 6 2.4614 -6.5197 -0.8615 16 6 -0.4134 -3.8478 -0.4027 17 8 -0.0490 -2.5137 0.0111 18 1 -0.4850 0.8400 -0.0004 19 1 0.8463 -5.5053 -2.0578 20 1 0.8513 -7.3789 0.4573 21 1 0.7585 -7.9252 -1.3017 22 1 2.9950 -6.8207 -1.7631 23 1 3.0880 -6.2744 -0.0039 24 1 -0.5796 -3.8952 -1.4789 25 1 -1.2900 -4.1985 0.1420 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973509.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -0.234652 kcal Electronic energy + Delta-G solvation = -10653.571322 eV Core-core repulsion = 8633.227754 eV Total energy + Delta-G solvation = -2020.343568 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.23749 -36.40056 -33.42939 -31.21650 -29.17946 -25.71173 -22.63727 -21.84634 -20.27892 -19.04543 -17.26860 -15.19336 -15.13088 -14.87977 -14.07133 -13.56080 -13.11503 -12.32221 -11.41718 -11.34043 -11.24703 -11.02989 -10.85083 -10.57300 -10.46032 -10.25255 -9.59099 -9.38802 -9.16074 -8.08353 -7.51301 -6.72527 -4.71541 2.99657 3.10262 3.16207 3.92312 3.96078 4.38634 5.07834 5.17245 5.42774 5.50396 5.57528 5.91246 6.04883 6.08267 6.21109 6.25579 6.38663 6.60171 6.76084 6.91892 7.08473 7.17572 7.82867 8.31515 8.65414 8.90128 9.98349 10.29147 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.088358 B = 0.010845 C = 0.009907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.817795 B = 2581.149059 C = 2825.677998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.078 3.922 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.101 0.899 9 C 0.410 3.590 10 N -0.686 5.686 11 C 0.071 3.929 12 H 0.053 0.947 13 C -0.122 4.122 14 C -0.194 4.194 15 C -0.160 4.160 16 C 0.017 3.983 17 O -0.315 6.315 18 H 0.280 0.720 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -4.134 -1.344 4.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.144 4.144 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.119 0.881 9 C 0.212 3.788 10 N -0.438 5.438 11 C -0.040 4.040 12 H 0.071 0.929 13 C -0.141 4.141 14 C -0.232 4.232 15 C -0.197 4.197 16 C -0.061 4.061 17 O -0.220 6.220 18 H 0.091 0.909 19 H 0.110 0.890 20 H 0.106 0.894 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.114 0.886 24 H 0.074 0.926 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.034 -4.285 -1.265 4.468 hybrid contribution -0.628 0.646 -0.107 0.907 sum -0.662 -3.639 -1.372 3.945 Atomic orbital electron populations 1.69759 1.07496 1.29211 1.33943 1.26084 0.94915 1.01731 0.91702 0.86070 0.80270 0.79672 0.79269 1.19276 1.20190 1.18283 1.18842 0.94548 0.86324 1.49072 0.88066 1.21953 0.78509 0.94106 0.84215 1.75630 1.24455 0.96256 1.47475 1.22577 0.91156 0.95265 0.95046 0.92941 1.22177 1.01840 0.90819 0.99250 1.22984 1.02655 0.96001 1.01521 1.22657 0.90680 1.03488 1.02880 1.24282 0.98609 0.84309 0.98915 1.87384 1.23674 1.29023 1.81881 0.90877 0.88974 0.89425 0.89691 0.89885 0.88626 0.92646 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.01 11.82 55.56 0.66 -20.36 15 2 C 0.08 2.03 5.50 -17.33 -0.10 1.94 15 3 Si 0.92 19.03 29.56 -169.99 -5.02 14.00 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 7 C -0.45 -12.69 9.47 -37.69 -0.36 -13.04 15 8 H 0.10 2.77 7.85 -52.49 -0.41 2.35 15 9 C 0.41 11.86 7.37 -16.91 -0.12 11.74 15 10 N -0.69 -18.89 11.43 -53.13 -0.61 -19.50 15 11 C 0.07 1.65 3.93 -66.40 -0.26 1.39 15 12 H 0.05 1.21 7.97 -51.93 -0.41 0.79 15 13 C -0.12 -2.37 5.49 -90.62 -0.50 -2.87 15 14 C -0.19 -3.07 10.19 -26.73 -0.27 -3.34 15 15 C -0.16 -2.82 10.19 -26.73 -0.27 -3.10 15 16 C 0.02 0.40 7.71 38.10 0.29 0.69 15 17 O -0.31 -8.88 9.20 -17.28 -0.16 -9.04 15 18 H 0.28 6.81 8.29 -40.82 -0.34 6.47 15 19 H 0.09 1.76 7.83 -51.93 -0.41 1.35 15 20 H 0.09 1.34 8.08 -51.93 -0.42 0.92 15 21 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.10 1.81 8.14 -51.93 -0.42 1.39 15 24 H 0.06 1.21 7.71 -51.93 -0.40 0.81 15 25 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 223.48 15.07 3.37 3.37 Total: -1.00 -30.03 223.48 -6.23 -36.26 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.88 Total: 1.86 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.59 Total: -6.60 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.05 Total: -39.85 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.16 Total: -9.04 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.03 -6.23 -36.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973509.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.024 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds