Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47039 * 30.00183 * 3 2 1 6 6 H 1.48502 * 109.46906 * 150.00089 * 3 2 1 7 7 C 1.40217 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.41261 * 119.99908 * 359.72287 * 7 2 1 10 10 N 1.30636 * 123.22232 * 180.27726 * 9 7 2 11 11 C 1.47586 * 108.33683 * 180.58765 * 10 9 7 12 12 H 1.09001 * 110.90620 * 256.78623 * 11 10 9 13 13 C 1.52997 * 110.90295 * 133.18978 * 11 10 9 14 14 C 1.53003 * 117.49922 * 130.07384 * 13 11 10 15 15 C 1.52998 * 60.00010 * 252.51408 * 14 13 11 16 16 C 1.54784 * 102.10528 * 14.99189 * 11 10 9 17 17 O 1.35193 * 123.22613 * 359.97438 * 9 7 2 18 18 H 0.96995 * 119.99874 * 0.02562 * 1 2 3 19 19 H 1.09000 * 115.55286 * 275.78511 * 13 11 10 20 20 H 1.09001 * 117.49381 * 0.02562 * 14 13 11 21 21 H 1.09001 * 117.49407 * 145.01659 * 14 13 11 22 22 H 1.09003 * 117.49600 * 252.50939 * 15 14 13 23 23 H 1.09002 * 117.49921 * 107.49291 * 15 14 13 24 24 H 1.08995 * 111.02245 * 94.38295 * 16 11 10 25 25 H 1.09002 * 111.01736 * 218.23400 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4876 2.0464 -1.4001 5 1 1.4376 2.6526 0.7001 6 1 3.5376 1.4401 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2144 -0.0001 9 6 1.3008 -2.4377 0.0048 10 7 1.8893 -3.6039 0.0099 11 6 0.8478 -4.6496 0.0002 12 1 0.7292 -5.0897 0.9903 13 6 1.1652 -5.7264 -1.0393 14 6 1.1125 -7.1860 -0.5832 15 6 2.4614 -6.5197 -0.8615 16 6 -0.4134 -3.8478 -0.4027 17 8 -0.0490 -2.5137 0.0111 18 1 -0.4850 0.8400 -0.0004 19 1 0.8463 -5.5053 -2.0578 20 1 0.8513 -7.3789 0.4573 21 1 0.7585 -7.9252 -1.3017 22 1 2.9950 -6.8207 -1.7631 23 1 3.0880 -6.2744 -0.0039 24 1 -0.5796 -3.8952 -1.4789 25 1 -1.2900 -4.1985 0.1420 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973509.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -22.943471 kcal Electronic energy + Delta-G solvation = -10654.556051 eV Core-core repulsion = 8633.227754 eV Total energy + Delta-G solvation = -2021.328296 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.20169 -37.91949 -35.42736 -33.22354 -31.10025 -27.72116 -24.36525 -23.19749 -22.14742 -20.84310 -19.31224 -17.08813 -16.97733 -16.46636 -15.87365 -15.32715 -14.81897 -14.12670 -13.20944 -13.11164 -13.04346 -12.70751 -12.42207 -12.33776 -12.17703 -11.90797 -11.10079 -11.07603 -10.94807 -10.09780 -9.55549 -8.68194 -6.82683 1.32692 1.42346 1.59192 1.99621 2.23204 2.94549 3.12683 3.36837 3.77189 3.99314 4.13160 4.21814 4.40273 4.45575 4.53455 4.78800 4.98478 5.07559 5.15357 5.17975 5.30572 5.36655 5.80720 6.22019 6.62152 6.80328 7.92299 8.34876 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.088358 B = 0.010845 C = 0.009907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.817795 B = 2581.149059 C = 2825.677998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.036 3.964 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.383 3.617 10 N -0.712 5.712 11 C 0.069 3.931 12 H 0.050 0.950 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.013 3.987 17 O -0.342 6.342 18 H 0.292 0.708 19 H 0.094 0.906 20 H 0.094 0.906 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -4.272 -1.725 4.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.184 4.184 3 Si 0.825 3.175 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.524 4.524 8 H 0.115 0.885 9 C 0.185 3.815 10 N -0.464 5.464 11 C -0.042 4.042 12 H 0.068 0.932 13 C -0.168 4.168 14 C -0.193 4.193 15 C -0.203 4.203 16 C -0.065 4.065 17 O -0.248 6.248 18 H 0.103 0.897 19 H 0.112 0.888 20 H 0.112 0.888 21 H 0.136 0.864 22 H 0.121 0.879 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.054 -4.462 -1.647 4.756 hybrid contribution -0.671 0.590 0.025 0.893 sum -0.724 -3.872 -1.622 4.260 Atomic orbital electron populations 1.69814 1.09206 1.31065 1.33600 1.27103 0.95797 1.05213 0.90250 0.84859 0.78671 0.74161 0.79844 1.18132 1.18607 1.17942 1.19199 0.94748 0.87653 1.50825 0.88474 1.22326 0.79073 0.94919 0.85151 1.75541 1.26544 0.97112 1.47170 1.22643 0.90129 0.95259 0.96193 0.93241 1.22058 1.04345 0.92061 0.98384 1.23080 0.99929 0.93650 1.02667 1.22703 0.90917 1.03560 1.03093 1.24526 0.99612 0.82485 0.99848 1.87314 1.23535 1.31649 1.82269 0.89741 0.88809 0.88794 0.86371 0.87923 0.90605 0.91851 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.03 11.82 21.87 0.26 -43.77 15 2 C 0.04 1.86 5.50 85.36 0.47 2.33 15 3 Si 1.01 38.54 29.56 68.60 2.03 40.57 15 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 7 C -0.49 -28.10 9.47 23.49 0.22 -27.88 15 8 H 0.10 5.47 7.85 -2.91 -0.02 5.44 15 9 C 0.38 22.80 7.37 85.61 0.63 23.43 15 10 N -0.71 -40.06 11.43 -435.96 -4.98 -45.05 15 11 C 0.07 3.19 3.93 45.39 0.18 3.37 15 12 H 0.05 2.28 7.97 -2.39 -0.02 2.26 15 13 C -0.15 -5.64 5.49 -10.79 -0.06 -5.70 15 14 C -0.16 -4.44 10.19 30.59 0.31 -4.13 15 15 C -0.17 -5.58 10.19 30.59 0.31 -5.27 15 16 C 0.01 0.59 7.71 72.59 0.56 1.15 15 17 O -0.34 -19.70 9.20 -84.73 -0.78 -20.48 15 18 H 0.29 14.06 8.29 -92.71 -0.77 13.29 15 19 H 0.09 3.47 7.83 -2.39 -0.02 3.45 15 20 H 0.09 2.58 8.08 -2.39 -0.02 2.56 15 21 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 22 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 23 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 24 H 0.06 2.76 7.71 -2.39 -0.02 2.75 15 25 H 0.10 4.10 8.14 -2.39 -0.02 4.09 15 Total: -1.00 -65.59 223.48 0.32 -65.27 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.18 Total: 16.16 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 2.62 Total: -12.70 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -4.73 Total: -88.82 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.78 Total: -20.48 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -65.59 0.32 -65.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973509.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.324 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds