Wall clock time and date at job start Mon Mar 30 2020 01:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 H 1.08993 * 115.52663 * 85.50053 * 12 2 1 14 14 C 1.53001 * 117.45812 * 230.95485 * 12 2 1 15 15 H 1.09007 * 119.29803 * 356.29134 * 14 12 2 16 16 C 1.54271 * 118.19988 * 201.21805 * 14 12 2 17 17 C 1.54886 * 104.19160 * 272.21180 * 16 14 12 18 18 C 1.57041 * 102.88597 * 38.08525 * 17 16 14 19 19 C 1.53000 * 117.46038 * 299.99709 * 12 2 1 20 20 H 1.09000 * 119.29751 * 3.71277 * 19 12 2 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08994 * 110.48305 * 30.89052 * 16 14 12 26 26 H 1.08993 * 110.48411 * 153.53504 * 16 14 12 27 27 H 1.09009 * 110.75244 * 156.25633 * 17 16 14 28 28 H 1.09002 * 110.75967 * 279.43875 * 17 16 14 29 29 H 1.08997 * 110.56315 * 203.84016 * 18 17 16 30 30 H 1.09008 * 111.38028 * 80.52584 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0399 -0.7212 1.2494 13 1 2.1237 -1.8046 1.1650 14 6 3.0813 0.0019 2.1058 15 1 3.4687 0.9653 1.7742 16 6 3.9655 -0.8429 3.0462 17 6 3.1438 -0.9386 4.3557 18 6 1.6698 -1.0855 3.8342 19 6 1.6350 -0.1486 2.6092 20 1 0.9570 0.7039 2.6484 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 4.1304 -1.8349 2.6258 26 1 4.9162 -0.3418 3.2282 27 1 3.4357 -1.8170 4.9315 28 1 3.2586 -0.0328 4.9510 29 1 0.9608 -0.7502 4.5911 30 1 1.4542 -2.1116 3.5360 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260982386.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:40 Heat of formation + Delta-G solvation = 1.625588 kcal Electronic energy + Delta-G solvation = -10817.963199 eV Core-core repulsion = 8998.959303 eV Total energy + Delta-G solvation = -1819.003896 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.88600 -34.14241 -31.51641 -28.82667 -27.76424 -25.07268 -22.48014 -20.30118 -19.16349 -18.70506 -16.21869 -15.23874 -14.43425 -14.32809 -12.78597 -12.71866 -12.69671 -11.79701 -11.59479 -11.07428 -11.01107 -10.79694 -10.75794 -10.60617 -10.47194 -10.21078 -10.05762 -9.40672 -9.00661 -8.66901 -8.53275 -8.25803 -5.93153 -3.98465 3.32721 3.40494 3.44844 4.39623 4.49375 5.04849 5.26659 5.31762 5.39896 5.81762 5.86134 5.94052 5.97905 6.12947 6.18478 6.20731 6.37645 6.45517 6.67877 6.81668 6.90238 6.99792 7.05605 7.32311 7.47992 7.79838 8.05359 8.20941 8.53043 9.04747 9.65543 11.13084 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.066676 B = 0.010769 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.839013 B = 2599.450737 C = 2834.844408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 H 0.026 0.974 4 C -0.505 4.505 5 H 0.055 0.945 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.080 4.080 13 H 0.085 0.915 14 C -0.172 4.172 15 H 0.101 0.899 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.093 4.093 19 C -0.183 4.183 20 H 0.099 0.901 21 H 0.007 0.993 22 H 0.080 0.920 23 H 0.024 0.976 24 H 0.258 0.742 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -2.453 9.356 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.049 3.951 3 H 0.044 0.956 4 C -0.543 4.543 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.099 4.099 13 H 0.103 0.897 14 C -0.190 4.190 15 H 0.119 0.881 16 C -0.132 4.132 17 C -0.159 4.159 18 C -0.131 4.131 19 C -0.201 4.201 20 H 0.117 0.883 21 H 0.026 0.974 22 H 0.098 0.902 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.304 -2.338 9.230 9.796 hybrid contribution 0.313 -0.323 -0.884 0.992 sum 2.617 -2.661 8.345 9.142 Atomic orbital electron populations 1.21727 0.98439 0.98907 0.99825 1.18320 0.92429 0.95092 0.89227 0.95625 1.21214 1.30591 1.12066 0.90422 0.92661 1.24969 0.95255 0.95063 0.98947 1.69905 1.37186 1.23056 1.23055 0.86564 0.78624 0.79707 0.83268 1.19815 1.21111 1.21127 1.22853 0.97553 0.98476 0.90972 0.89681 1.23315 0.90354 1.01570 1.03748 0.88122 1.21896 0.97400 0.99536 0.94327 1.23020 0.95179 1.00583 0.97167 1.22277 0.95793 0.99012 0.95996 1.23287 0.98805 1.02599 0.95403 0.88292 0.97354 0.90151 0.95659 0.93189 0.91889 0.92134 0.92359 0.91867 0.92182 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.81 37.16 0.33 -2.95 16 2 C 0.07 1.74 2.45 -91.77 -0.22 1.51 16 3 H 0.03 0.72 7.96 -51.93 -0.41 0.30 16 4 C -0.50 -14.17 8.54 -34.44 -0.29 -14.47 16 5 H 0.06 1.54 7.73 -52.49 -0.41 1.13 16 6 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 7 N -0.89 -26.06 11.33 55.43 0.63 -25.43 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C -0.08 -1.74 4.64 -90.62 -0.42 -2.16 16 13 H 0.09 1.87 8.10 -51.93 -0.42 1.45 16 14 C -0.17 -3.26 6.55 -89.50 -0.59 -3.84 16 15 H 0.10 1.97 8.13 -51.93 -0.42 1.55 16 16 C -0.09 -1.47 6.63 -25.07 -0.17 -1.63 16 17 C -0.12 -1.67 6.96 -23.55 -0.16 -1.83 16 18 C -0.09 -1.42 6.79 -23.88 -0.16 -1.58 16 19 C -0.18 -3.38 6.09 -89.50 -0.54 -3.92 16 20 H 0.10 1.87 7.58 -51.93 -0.39 1.47 16 21 H 0.01 0.17 7.27 -51.93 -0.38 -0.21 16 22 H 0.08 2.20 6.08 -51.93 -0.32 1.88 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 243.10 15.07 3.66 3.66 Total: -1.00 -28.50 243.10 -7.90 -36.40 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.84 Total: -1.95 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -2.33 Total: -29.32 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.63 Total: -25.43 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.50 -7.90 -36.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982386.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.030 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds