Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 H 1.08993 * 115.52663 * 85.50053 * 12 2 1 14 14 C 1.53001 * 117.45812 * 230.95485 * 12 2 1 15 15 H 1.09007 * 119.29803 * 356.29134 * 14 12 2 16 16 C 1.54271 * 118.19988 * 201.21805 * 14 12 2 17 17 C 1.54886 * 104.19160 * 272.21180 * 16 14 12 18 18 C 1.57041 * 102.88597 * 38.08525 * 17 16 14 19 19 C 1.53000 * 117.46038 * 299.99709 * 12 2 1 20 20 H 1.09000 * 119.29751 * 3.71277 * 19 12 2 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08994 * 110.48305 * 30.89052 * 16 14 12 26 26 H 1.08993 * 110.48411 * 153.53504 * 16 14 12 27 27 H 1.09009 * 110.75244 * 156.25633 * 17 16 14 28 28 H 1.09002 * 110.75967 * 279.43875 * 17 16 14 29 29 H 1.08997 * 110.56315 * 203.84016 * 18 17 16 30 30 H 1.09008 * 111.38028 * 80.52584 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0399 -0.7212 1.2494 13 1 2.1237 -1.8046 1.1650 14 6 3.0813 0.0019 2.1058 15 1 3.4687 0.9653 1.7742 16 6 3.9655 -0.8429 3.0462 17 6 3.1438 -0.9386 4.3557 18 6 1.6698 -1.0855 3.8342 19 6 1.6350 -0.1486 2.6092 20 1 0.9570 0.7039 2.6484 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 4.1304 -1.8349 2.6258 26 1 4.9162 -0.3418 3.2282 27 1 3.4357 -1.8170 4.9315 28 1 3.2586 -0.0328 4.9510 29 1 0.9608 -0.7502 4.5911 30 1 1.4542 -2.1116 3.5360 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260982386.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = -12.981465 kcal Electronic energy + Delta-G solvation = -10818.596609 eV Core-core repulsion = 8998.959303 eV Total energy + Delta-G solvation = -1819.637306 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.35732 -36.08065 -33.33664 -30.54860 -29.04001 -27.21875 -24.22238 -21.65412 -20.81447 -20.25719 -18.33228 -16.95038 -16.11028 -15.81140 -14.61573 -14.39696 -14.01941 -13.54333 -13.35052 -12.94097 -12.87528 -12.56481 -12.26659 -12.16305 -11.98020 -11.79368 -11.65994 -11.17713 -10.98873 -10.51265 -10.23972 -10.22241 -8.09352 -6.22858 1.39481 1.40685 1.52840 2.42571 2.92027 3.18563 3.71088 4.00373 4.06627 4.41299 4.45629 4.60872 4.65888 4.79768 4.85861 4.93065 4.96660 5.09328 5.15079 5.22781 5.24167 5.33143 5.48250 5.51223 5.61030 5.63790 5.96514 6.11256 6.39597 6.87846 7.45002 8.96002 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.066676 B = 0.010769 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.839013 B = 2599.450737 C = 2834.844408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.066 3.934 3 H -0.009 1.009 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 C -0.107 4.107 13 H 0.080 0.920 14 C -0.173 4.173 15 H 0.086 0.914 16 C -0.092 4.092 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.168 4.168 20 H 0.092 0.908 21 H 0.028 0.972 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -3.422 10.693 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.048 3.952 3 H 0.009 0.991 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 C -0.126 4.126 13 H 0.098 0.902 14 C -0.191 4.191 15 H 0.104 0.896 16 C -0.129 4.129 17 C -0.149 4.149 18 C -0.129 4.129 19 C -0.187 4.187 20 H 0.110 0.890 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.954 -3.310 10.578 11.471 hybrid contribution 0.099 0.023 -1.304 1.308 sum 3.053 -3.287 9.274 10.302 Atomic orbital electron populations 1.21567 0.98150 0.98703 0.99400 1.18213 0.92746 0.93387 0.90883 0.99083 1.21547 1.30792 1.12197 0.91816 0.93099 1.25788 0.95416 0.95788 1.02033 1.70038 1.37998 1.24237 1.23818 0.85529 0.78210 0.78704 0.79367 1.19114 1.20451 1.20619 1.22519 1.01190 0.97769 0.91075 0.90230 1.23423 0.91601 1.01038 1.03059 0.89610 1.21948 0.97831 0.98765 0.94395 1.22996 0.93185 1.02495 0.96230 1.22349 0.97740 0.98107 0.94677 1.23391 0.98102 1.02422 0.94747 0.88991 0.95335 0.92909 0.95556 0.93049 0.92085 0.90456 0.89731 0.90567 0.90033 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.81 71.98 0.63 -5.50 16 2 C 0.07 3.50 2.45 -11.54 -0.03 3.47 16 3 H -0.01 -0.52 7.96 -2.39 -0.02 -0.54 16 4 C -0.53 -30.17 8.54 25.60 0.22 -29.95 16 5 H 0.05 2.88 7.73 -2.91 -0.02 2.86 16 6 C 0.01 0.44 5.31 84.65 0.45 0.89 16 7 N -0.92 -54.95 11.33 21.45 0.24 -54.71 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C -0.11 -4.68 4.64 -10.79 -0.05 -4.73 16 13 H 0.08 3.52 8.10 -2.39 -0.02 3.50 16 14 C -0.17 -6.45 6.55 -10.07 -0.07 -6.52 16 15 H 0.09 3.41 8.13 -2.38 -0.02 3.39 16 16 C -0.09 -2.63 6.63 31.67 0.21 -2.42 16 17 C -0.11 -2.60 6.96 32.66 0.23 -2.38 16 18 C -0.09 -2.48 6.79 32.44 0.22 -2.26 16 19 C -0.17 -6.02 6.09 -10.07 -0.06 -6.08 16 20 H 0.09 3.39 7.58 -2.39 -0.02 3.37 16 21 H 0.03 1.27 7.27 -2.39 -0.02 1.26 16 22 H 0.05 2.96 6.08 -2.38 -0.01 2.95 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -61.62 243.10 5.11 -56.51 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.08 Total: 6.87 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 1.75 Total: -55.48 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.24 Total: -54.71 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -61.62 5.11 -56.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982386.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.527 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds