Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47498 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99610 * 2 1 3 5 5 H 1.08007 * 119.99755 * 274.94340 * 4 2 1 6 6 C 1.37873 * 120.00213 * 94.94717 * 4 2 1 7 7 N 1.31512 * 120.00418 * 184.90968 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.90811 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 C 1.53006 * 109.47177 * 119.99557 * 2 1 3 13 13 H 1.09006 * 115.55361 * 34.34097 * 12 2 1 14 14 C 1.53117 * 117.51455 * 248.61445 * 12 2 1 15 15 C 1.52455 * 117.51752 * 180.14630 * 12 2 1 16 16 C 1.53260 * 128.58436 * 349.84829 * 15 12 2 17 17 C 1.53884 * 86.88431 * 194.88645 * 16 15 12 18 18 C 1.53251 * 128.58859 * 225.05256 * 15 12 2 19 19 H 1.09005 * 109.46681 * 55.03629 * 1 2 3 20 20 H 1.09000 * 109.47265 * 295.03529 * 1 2 3 21 21 H 1.09002 * 109.46737 * 175.03014 * 1 2 3 22 22 H 0.96999 * 120.00184 * 179.97438 * 7 6 4 23 23 H 1.09006 * 117.51338 * 359.97438 * 14 12 2 24 24 H 1.08996 * 117.51468 * 145.09977 * 14 12 2 25 25 H 1.08994 * 113.64450 * 309.38945 * 16 15 12 26 26 H 1.08999 * 113.64351 * 80.38810 * 16 15 12 27 27 H 1.09000 * 113.58795 * 270.39277 * 17 16 15 28 28 H 1.08994 * 113.58606 * 139.57060 * 17 16 15 29 29 H 1.09002 * 113.64441 * 279.60792 * 18 15 12 30 30 H 1.08997 * 113.64911 * 50.60966 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1364 -1.7855 -1.2285 6 6 2.3593 0.0118 -2.3584 7 7 2.7051 -0.6136 -3.4624 8 14 2.3109 1.8788 -2.3185 9 1 3.5962 2.3959 -1.7838 10 1 2.1023 2.3981 -3.6940 11 1 1.1959 2.3266 -1.4459 12 6 2.0400 -0.7212 1.2493 13 1 1.4312 -1.5586 1.5904 14 6 2.7427 0.1231 2.3161 15 6 3.5496 -0.8249 1.4359 16 6 4.6615 -0.4877 0.4365 17 6 5.6134 -1.2668 1.3611 18 6 4.3796 -2.0435 1.8535 19 1 -0.3633 0.5890 -0.8422 20 1 -0.3634 0.4349 0.9311 21 1 -0.3633 -1.0238 -0.0890 22 1 2.9347 -0.1054 -4.2561 23 1 2.8419 1.1921 2.1275 24 1 2.5967 -0.1595 3.3586 25 1 4.5257 -0.9502 -0.5410 26 1 4.8860 0.5772 0.3751 27 1 6.0761 -0.6494 2.1311 28 1 6.3329 -1.8856 0.8249 29 1 4.3781 -2.2260 2.9282 30 1 4.1654 -2.9391 1.2704 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = 31.341024 kcal Electronic energy + Delta-G solvation = -11112.376905 eV Core-core repulsion = 9294.661566 eV Total energy + Delta-G solvation = -1817.715338 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.85448 -34.60767 -32.29722 -30.27773 -25.32936 -24.72072 -22.32753 -22.12292 -19.09643 -17.38349 -16.78824 -14.72256 -14.57260 -14.43963 -13.52366 -12.53207 -12.42265 -11.86702 -11.64080 -11.47180 -11.03817 -10.90117 -10.81800 -10.60927 -10.51520 -9.77432 -9.69876 -9.43309 -9.13577 -8.93179 -8.39560 -8.30961 -5.99881 -3.94828 3.32086 3.40650 3.43092 4.48553 4.56550 5.14849 5.32174 5.34957 5.56337 5.57646 5.77228 6.03979 6.18818 6.24031 6.34812 6.43137 6.49390 6.52188 6.57646 6.66176 6.82367 6.96072 7.07235 7.11548 7.28540 7.31443 7.59811 7.86755 8.63307 9.06244 9.64487 11.13807 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.038709 B = 0.017661 C = 0.014992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.178837 B = 1585.075603 C = 1867.206705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 H 0.029 0.971 4 C -0.490 4.490 5 H 0.072 0.928 6 C 0.070 3.930 7 N -0.905 5.905 8 Si 0.868 3.132 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.266 1.266 12 C -0.101 4.101 13 H 0.086 0.914 14 C -0.173 4.173 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.143 4.143 18 C -0.098 4.098 19 H 0.040 0.960 20 H 0.022 0.978 21 H 0.044 0.956 22 H 0.261 0.739 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 1.031 8.965 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.090 0.910 6 C -0.130 4.130 7 N -0.544 5.544 8 Si 0.696 3.304 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.191 1.191 12 C -0.119 4.119 13 H 0.105 0.895 14 C -0.210 4.210 15 C -0.144 4.144 16 C -0.123 4.123 17 C -0.181 4.181 18 C -0.135 4.135 19 H 0.059 0.941 20 H 0.041 0.959 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.973 1.059 8.765 9.047 hybrid contribution -0.006 1.063 -0.072 1.066 sum 1.967 2.123 8.694 9.163 Atomic orbital electron populations 1.21959 0.98979 1.00209 0.98113 1.18789 0.91914 0.95216 0.92464 0.95276 1.20862 1.42165 0.95283 0.94479 0.91011 1.24979 0.95062 0.97595 0.95357 1.69901 1.47426 1.35453 1.01636 0.86995 0.79038 0.87452 0.76866 1.20276 1.21829 1.19111 1.22318 0.93157 0.99810 0.96651 0.89542 1.22928 1.05851 0.96784 0.95418 1.22005 0.93495 0.98179 1.00709 1.22387 0.92343 0.99184 0.98361 1.22791 0.96178 0.99435 0.99673 1.22383 0.95418 0.96422 0.99250 0.94106 0.95938 0.93666 0.92885 0.89735 0.90198 0.87665 0.93084 0.91310 0.92145 0.92802 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.16 37.16 0.34 -2.58 16 2 C 0.04 0.83 2.01 -91.77 -0.18 0.64 16 3 H 0.03 0.71 5.06 -51.93 -0.26 0.45 16 4 C -0.49 -13.39 6.91 -34.44 -0.24 -13.62 16 5 H 0.07 2.16 8.06 -52.48 -0.42 1.73 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.91 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.44 6.82 56.52 0.39 -6.06 16 12 C -0.10 -2.09 5.14 -90.84 -0.47 -2.55 16 13 H 0.09 1.72 8.11 -51.93 -0.42 1.30 16 14 C -0.17 -3.13 10.18 -26.95 -0.27 -3.40 16 15 C -0.14 -2.80 2.75 -154.80 -0.43 -3.22 16 16 C -0.09 -1.73 7.21 -26.14 -0.19 -1.92 16 17 C -0.14 -2.36 8.08 -25.81 -0.21 -2.57 16 18 C -0.10 -1.65 8.10 -26.14 -0.21 -1.86 16 19 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.11 2.46 7.14 -51.93 -0.37 2.09 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 245.00 15.07 3.69 3.69 Total: -1.00 -28.69 245.00 -6.93 -35.62 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.85 Total: -0.65 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -1.96 Total: -29.19 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.69 -6.93 -35.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.958 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds