Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47498 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99610 * 2 1 3 5 5 H 1.08007 * 119.99755 * 274.94340 * 4 2 1 6 6 C 1.37873 * 120.00213 * 94.94717 * 4 2 1 7 7 N 1.31512 * 120.00418 * 184.90968 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.90811 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 C 1.53006 * 109.47177 * 119.99557 * 2 1 3 13 13 H 1.09006 * 115.55361 * 34.34097 * 12 2 1 14 14 C 1.53117 * 117.51455 * 248.61445 * 12 2 1 15 15 C 1.52455 * 117.51752 * 180.14630 * 12 2 1 16 16 C 1.53260 * 128.58436 * 349.84829 * 15 12 2 17 17 C 1.53884 * 86.88431 * 194.88645 * 16 15 12 18 18 C 1.53251 * 128.58859 * 225.05256 * 15 12 2 19 19 H 1.09005 * 109.46681 * 55.03629 * 1 2 3 20 20 H 1.09000 * 109.47265 * 295.03529 * 1 2 3 21 21 H 1.09002 * 109.46737 * 175.03014 * 1 2 3 22 22 H 0.96999 * 120.00184 * 179.97438 * 7 6 4 23 23 H 1.09006 * 117.51338 * 359.97438 * 14 12 2 24 24 H 1.08996 * 117.51468 * 145.09977 * 14 12 2 25 25 H 1.08994 * 113.64450 * 309.38945 * 16 15 12 26 26 H 1.08999 * 113.64351 * 80.38810 * 16 15 12 27 27 H 1.09000 * 113.58795 * 270.39277 * 17 16 15 28 28 H 1.08994 * 113.58606 * 139.57060 * 17 16 15 29 29 H 1.09002 * 113.64441 * 279.60792 * 18 15 12 30 30 H 1.08997 * 113.64911 * 50.60966 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1364 -1.7855 -1.2285 6 6 2.3593 0.0118 -2.3584 7 7 2.7051 -0.6136 -3.4624 8 14 2.3109 1.8788 -2.3185 9 1 3.5962 2.3959 -1.7838 10 1 2.1023 2.3981 -3.6940 11 1 1.1959 2.3266 -1.4459 12 6 2.0400 -0.7212 1.2493 13 1 1.4312 -1.5586 1.5904 14 6 2.7427 0.1231 2.3161 15 6 3.5496 -0.8249 1.4359 16 6 4.6615 -0.4877 0.4365 17 6 5.6134 -1.2668 1.3611 18 6 4.3796 -2.0435 1.8535 19 1 -0.3633 0.5890 -0.8422 20 1 -0.3634 0.4349 0.9311 21 1 -0.3633 -1.0238 -0.0890 22 1 2.9347 -0.1054 -4.2561 23 1 2.8419 1.1921 2.1275 24 1 2.5967 -0.1595 3.3586 25 1 4.5257 -0.9502 -0.5410 26 1 4.8860 0.5772 0.3751 27 1 6.0761 -0.6494 2.1311 28 1 6.3329 -1.8856 0.8249 29 1 4.3781 -2.2260 2.9282 30 1 4.1654 -2.9391 1.2704 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = 15.615822 kcal Electronic energy + Delta-G solvation = -11113.058801 eV Core-core repulsion = 9294.661566 eV Total energy + Delta-G solvation = -1818.397234 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36171 -36.34165 -34.26246 -32.08421 -27.24615 -26.32149 -23.85491 -23.71183 -20.82368 -18.95546 -18.90127 -16.47699 -16.16222 -15.96747 -15.28653 -14.49211 -14.34896 -13.56607 -13.17389 -13.05148 -12.86158 -12.59539 -12.44797 -12.25372 -12.07047 -11.75157 -11.33829 -11.22389 -10.84156 -10.77228 -10.36864 -9.92690 -8.21336 -6.18604 1.32317 1.34284 1.43598 2.37926 3.04126 3.17382 3.66988 3.96675 4.07851 4.12535 4.27512 4.60706 4.68539 4.75064 4.87848 4.89716 4.96562 5.03595 5.06517 5.15041 5.18769 5.32317 5.40273 5.44463 5.63160 5.74598 5.78444 5.83749 6.42660 6.84275 7.43155 8.96287 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.038709 B = 0.017661 C = 0.014992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.178837 B = 1585.075603 C = 1867.206705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.032 3.968 3 H 0.025 0.975 4 C -0.477 4.477 5 H 0.028 0.972 6 C 0.015 3.985 7 N -0.955 5.955 8 Si 0.925 3.075 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.248 1.248 12 C -0.128 4.128 13 H 0.092 0.908 14 C -0.140 4.140 15 C -0.161 4.161 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.090 4.090 19 H 0.030 0.970 20 H 0.055 0.945 21 H 0.041 0.959 22 H 0.261 0.739 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 2.192 11.615 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 H 0.043 0.957 4 C -0.515 4.515 5 H 0.046 0.954 6 C -0.181 4.181 7 N -0.596 5.596 8 Si 0.750 3.250 9 H -0.196 1.196 10 H -0.219 1.219 11 H -0.171 1.171 12 C -0.146 4.146 13 H 0.110 0.890 14 C -0.177 4.177 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.163 4.163 18 C -0.127 4.127 19 H 0.049 0.951 20 H 0.074 0.926 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.987 2.221 11.441 11.822 hybrid contribution -0.019 0.622 -0.901 1.095 sum 1.968 2.842 10.540 11.092 Atomic orbital electron populations 1.21864 0.97347 1.00260 0.99439 1.18769 0.93220 0.94647 0.92073 0.95698 1.21018 1.40874 0.93424 0.96204 0.95375 1.25708 0.95222 1.02139 0.94981 1.70048 1.49774 1.37276 1.02542 0.86073 0.79801 0.82041 0.77069 1.19585 1.21935 1.17139 1.22203 0.94299 1.01177 0.96957 0.88964 1.22974 1.02199 0.96324 0.96205 1.22256 0.92520 1.00080 1.01233 1.22298 0.95322 0.98863 0.97315 1.22746 0.95735 0.98799 0.98978 1.22335 0.94563 0.94952 1.00885 0.95122 0.92599 0.93938 0.93028 0.89558 0.86779 0.92248 0.93759 0.88683 0.91403 0.89759 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 9.16 71.98 0.66 -4.80 16 2 C 0.03 1.47 2.01 -11.54 -0.02 1.44 16 3 H 0.02 1.17 5.06 -2.39 -0.01 1.15 16 4 C -0.48 -26.79 6.91 25.60 0.18 -26.62 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 6 C 0.02 0.88 5.47 84.65 0.46 1.34 16 7 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 8 Si 0.92 45.01 26.99 68.60 1.85 46.86 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.25 -11.22 6.82 99.48 0.68 -10.54 16 12 C -0.13 -5.06 5.14 -10.93 -0.06 -5.12 16 13 H 0.09 3.50 8.11 -2.38 -0.02 3.48 16 14 C -0.14 -4.52 10.18 30.46 0.31 -4.21 16 15 C -0.16 -5.95 2.75 -52.37 -0.14 -6.09 16 16 C -0.10 -4.05 7.21 30.98 0.22 -3.82 16 17 C -0.13 -3.83 8.08 31.19 0.25 -3.58 16 18 C -0.09 -2.83 8.10 30.98 0.25 -2.58 16 19 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.09 2.77 8.05 -2.38 -0.02 2.75 16 24 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.06 2.91 7.14 -2.39 -0.02 2.90 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -63.23 245.00 5.32 -57.91 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.06 Total: 9.06 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 2.11 Total: -54.03 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.30 Total: -59.80 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.85 Total: 46.86 kcal Total: -63.23 5.32 -57.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.523 kcal (2) G-P(sol) polarization free energy of solvation -63.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds