Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46694 * 2 1 4 4 C 1.50692 * 109.47152 * 119.99659 * 2 1 3 5 5 H 1.08004 * 120.00057 * 114.31641 * 4 2 1 6 6 C 1.37878 * 120.00556 * 294.32305 * 4 2 1 7 7 N 1.31510 * 120.00634 * 155.85483 * 6 4 2 8 8 Si 1.86805 * 119.99292 * 335.85102 * 6 4 2 9 9 H 1.48506 * 109.46866 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47374 * 299.99978 * 8 6 4 11 11 H 1.48497 * 109.46955 * 60.00517 * 8 6 4 12 12 C 1.53002 * 109.47000 * 240.00201 * 2 1 3 13 13 H 1.08994 * 115.56004 * 325.72825 * 12 2 1 14 14 C 1.53122 * 117.51188 * 111.53789 * 12 2 1 15 15 C 1.52459 * 117.50719 * 180.02562 * 12 2 1 16 16 C 1.53265 * 128.58580 * 134.95180 * 15 12 2 17 17 C 1.53882 * 86.88253 * 194.88631 * 16 15 12 18 18 C 1.53250 * 128.59022 * 10.15019 * 15 12 2 19 19 H 1.08994 * 109.47265 * 293.02910 * 1 2 3 20 20 H 1.09002 * 109.47128 * 53.03661 * 1 2 3 21 21 H 1.09001 * 109.47164 * 173.02938 * 1 2 3 22 22 H 0.97000 * 119.99619 * 354.92865 * 7 6 4 23 23 H 1.08998 * 117.51221 * 214.88906 * 14 12 2 24 24 H 1.08995 * 117.51685 * 0.02562 * 14 12 2 25 25 H 1.09002 * 113.64018 * 309.38406 * 16 15 12 26 26 H 1.09002 * 113.64521 * 80.38116 * 16 15 12 27 27 H 1.09004 * 113.58244 * 270.39129 * 17 16 15 28 28 H 1.08995 * 113.58702 * 139.57705 * 17 16 15 29 29 H 1.09002 * 113.64603 * 279.61312 * 18 15 12 30 30 H 1.09001 * 113.65065 * 50.61453 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5755 -1.6388 1.1341 6 6 1.7985 -0.1750 2.4794 7 7 1.7886 -0.9552 3.5380 8 14 1.4960 1.6588 2.6676 9 1 1.2719 1.9789 4.1004 10 1 2.6774 2.4090 2.1712 11 1 0.2973 2.0460 1.8812 12 6 2.0400 -0.7212 -1.2493 13 1 1.4306 -1.5578 -1.5910 14 6 2.7458 0.1225 -2.3145 15 6 3.5496 -0.8283 -1.4336 16 6 4.3774 -2.0487 -1.8513 17 6 5.6123 -1.2754 -1.3562 18 6 4.6609 -0.4948 -0.4324 19 1 -0.3633 0.4020 0.9457 20 1 -0.3633 0.6180 -0.8211 21 1 -0.3633 -1.0201 -0.1247 22 1 1.8722 -1.9159 3.4332 23 1 2.6006 -0.1590 -3.3574 24 1 2.8471 1.1910 -2.1249 25 1 4.1601 -2.9443 -1.2692 26 1 4.3770 -2.2302 -2.9261 27 1 6.0775 -0.6583 -2.1250 28 1 6.3295 -1.8964 -0.8196 29 1 4.8878 0.5695 -0.3696 30 1 4.5226 -0.9579 0.5446 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 30.615788 kcal Electronic energy + Delta-G solvation = -11058.189238 eV Core-core repulsion = 9240.442451 eV Total energy + Delta-G solvation = -1817.746787 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.92545 -34.67261 -32.42612 -30.13082 -25.23102 -24.47570 -22.40503 -22.09253 -19.05376 -17.43669 -17.31411 -14.81035 -14.66058 -14.08223 -13.40380 -13.09446 -12.34061 -11.79236 -11.69507 -11.35355 -11.09323 -10.89633 -10.68247 -10.46474 -10.27087 -9.82204 -9.78642 -9.40443 -9.08447 -9.01372 -8.41928 -8.01056 -6.33894 -3.90459 3.46602 3.49822 3.67670 4.50555 4.59646 5.08351 5.25757 5.30356 5.46267 5.54031 5.70321 5.97872 6.11671 6.20964 6.26715 6.39744 6.42777 6.49243 6.56055 6.66103 6.74804 6.96619 7.02823 7.11524 7.14124 7.34767 7.66821 8.32552 8.49920 9.04439 9.71733 11.01490 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.043967 B = 0.015470 C = 0.013789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.690990 B = 1809.501019 C = 2030.051772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.058 0.942 6 C 0.034 3.966 7 N -0.905 5.905 8 Si 1.034 2.966 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.279 1.279 12 C -0.097 4.097 13 H 0.085 0.915 14 C -0.170 4.170 15 C -0.148 4.148 16 C -0.099 4.099 17 C -0.143 4.143 18 C -0.084 4.084 19 H 0.047 0.953 20 H 0.020 0.980 21 H 0.039 0.961 22 H 0.267 0.733 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 1.427 -9.202 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 H 0.036 0.964 4 C -0.624 4.624 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.539 5.539 8 Si 0.862 3.138 9 H -0.214 1.214 10 H -0.212 1.212 11 H -0.205 1.205 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.207 4.207 15 C -0.148 4.148 16 C -0.137 4.137 17 C -0.180 4.180 18 C -0.121 4.121 19 H 0.066 0.934 20 H 0.039 0.961 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.847 2.611 -8.064 8.941 hybrid contribution 0.210 -1.221 -1.217 1.737 sum 3.057 1.389 -9.281 9.870 Atomic orbital electron populations 1.22116 0.99177 0.99397 0.99028 1.18586 0.91514 0.94931 0.92351 0.96439 1.21839 1.39631 1.10281 0.90673 0.92385 1.25618 0.93647 1.05419 0.92372 1.70849 1.44837 1.06036 1.32210 0.84175 0.77115 0.76783 0.75698 1.21443 1.21191 1.20550 1.22260 0.92813 0.99703 0.96777 0.89693 1.22934 1.05579 0.96845 0.95371 1.22037 0.93650 0.98216 1.00922 1.22398 0.95510 0.96376 0.99374 1.22798 0.96101 0.99418 0.99728 1.22356 0.92449 0.99423 0.97882 0.93416 0.96119 0.94151 0.92298 0.90225 0.89499 0.90343 0.92691 0.91120 0.92206 0.92638 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.92 37.16 0.33 -2.82 16 2 C 0.05 1.08 1.96 -91.77 -0.18 0.90 16 3 H 0.02 0.43 6.46 -51.93 -0.34 0.10 16 4 C -0.59 -16.14 7.08 -34.44 -0.24 -16.38 16 5 H 0.06 1.72 7.35 -52.48 -0.39 1.34 16 6 C 0.03 0.98 5.18 -17.82 -0.09 0.89 16 7 N -0.91 -27.73 13.70 55.43 0.76 -26.97 16 8 Si 1.03 25.51 26.48 -169.99 -4.50 21.01 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.48 6.23 56.52 0.35 -6.13 16 12 C -0.10 -2.04 5.10 -90.83 -0.46 -2.51 16 13 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 14 C -0.17 -3.07 10.18 -26.92 -0.27 -3.35 16 15 C -0.15 -2.86 2.73 -154.77 -0.42 -3.28 16 16 C -0.10 -1.66 8.10 -26.13 -0.21 -1.87 16 17 C -0.14 -2.28 8.08 -25.81 -0.21 -2.48 16 18 C -0.08 -1.64 7.20 -26.14 -0.19 -1.83 16 19 H 0.05 1.13 5.59 -51.93 -0.29 0.83 16 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 22 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.10 2.18 6.75 -51.93 -0.35 1.83 16 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -28.85 241.28 -6.84 -35.69 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.78 Total: -0.64 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -1.95 Total: -32.73 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.76 Total: -26.97 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -4.50 Total: 21.01 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.85 -6.84 -35.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.307 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds