Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 H 1.09003 * 115.57259 * 330.58471 * 10 9 7 12 12 C 1.53652 * 117.54092 * 184.73262 * 10 9 7 13 13 H 1.08996 * 117.18754 * 359.87243 * 12 10 9 14 14 C 1.52712 * 116.02986 * 141.80409 * 12 10 9 15 15 C 1.52873 * 110.15300 * 90.20524 * 14 12 10 16 16 C 1.53303 * 108.57979 * 305.48099 * 15 14 12 17 17 C 1.52870 * 108.59439 * 74.44300 * 16 15 14 18 18 C 1.50314 * 110.12049 * 304.91349 * 17 16 15 19 19 H 1.09011 * 112.91953 * 166.34858 * 18 17 16 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.08999 * 109.35389 * 210.41526 * 14 12 10 24 24 H 1.09004 * 109.35873 * 330.13572 * 14 12 10 25 25 H 1.09002 * 109.61787 * 65.20403 * 15 14 12 26 26 H 1.08995 * 109.62502 * 185.56748 * 15 14 12 27 27 H 1.09005 * 109.61605 * 194.17374 * 16 15 14 28 28 H 1.09003 * 109.61542 * 314.52809 * 16 15 14 29 29 H 1.08994 * 109.26896 * 65.37495 * 17 16 15 30 30 H 1.09005 * 109.26705 * 184.88079 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 3.2017 -3.4633 -0.4823 12 6 1.6749 -5.0844 -0.1099 13 1 0.5917 -5.1824 -0.1803 14 6 2.4778 -6.0635 -0.9636 15 6 3.5036 -6.7972 -0.0995 16 6 4.3616 -5.7568 0.6295 17 6 3.5315 -5.1446 1.7579 18 6 2.2470 -4.5874 1.2111 19 1 1.5196 -4.3555 1.9892 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 1.8007 -6.7887 -1.4148 24 1 2.9968 -5.5157 -1.7501 25 1 2.9878 -7.4220 0.6297 26 1 4.1367 -7.4194 -0.7319 27 1 5.2461 -6.2389 1.0460 28 1 4.6646 -4.9775 -0.0698 29 1 3.3111 -5.9123 2.4995 30 1 4.1003 -4.3426 2.2285 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261019649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -15.434540 kcal Electronic energy + Delta-G solvation = -10764.368447 eV Core-core repulsion = 8944.624768 eV Total energy + Delta-G solvation = -1819.743679 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.18810 -33.97561 -32.32083 -30.48950 -27.80620 -24.01449 -22.28909 -22.19733 -19.62130 -17.86421 -16.77162 -15.35162 -14.09085 -13.75137 -13.69050 -13.59168 -12.71836 -12.22206 -12.05044 -11.88733 -11.42397 -11.16064 -10.82472 -10.60881 -10.45185 -10.09657 -9.91288 -9.79065 -9.12699 -8.81091 -8.36505 -8.19519 -6.31148 -3.99195 3.45893 3.49939 3.65640 4.38582 4.58769 4.99760 5.11641 5.16244 5.44333 5.51938 5.62516 5.71234 5.76418 5.86861 5.91775 5.98749 6.21766 6.26050 6.40899 6.49148 6.56605 6.61075 6.78340 6.86325 7.01300 7.46401 7.57199 8.28513 8.51830 8.94103 9.72033 11.09145 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.067568 B = 0.009805 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.300013 B = 2854.956055 C = 3013.817259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.049 0.951 9 C 0.033 3.967 10 C -0.104 4.104 11 H 0.092 0.908 12 C -0.169 4.169 13 H 0.093 0.907 14 C -0.085 4.085 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.083 4.083 18 C -0.147 4.147 19 H 0.087 0.913 20 H 0.268 0.732 21 H 0.008 0.992 22 H 0.011 0.989 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 -10.763 0.734 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.632 4.632 8 H 0.067 0.933 9 C -0.004 4.004 10 C -0.122 4.122 11 H 0.110 0.890 12 C -0.187 4.187 13 H 0.111 0.889 14 C -0.122 4.122 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.121 4.121 18 C -0.165 4.165 19 H 0.105 0.895 20 H 0.078 0.922 21 H 0.026 0.974 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.180 -9.113 0.741 11.036 hybrid contribution 0.109 -1.671 0.043 1.675 sum 6.288 -10.784 0.784 12.508 Atomic orbital electron populations 1.70753 1.06879 1.30537 1.47113 1.25858 0.96587 1.02721 0.93979 0.83514 0.74672 0.75130 0.76707 1.21492 1.21505 1.21022 1.22068 0.94262 0.91813 1.55049 0.93313 1.18902 0.93596 0.92071 0.95806 1.22720 1.00795 0.89829 0.98827 0.88985 1.22351 0.98499 0.98148 0.99691 0.88916 1.20995 0.96951 0.97105 0.97196 1.21537 0.97494 0.97465 0.98823 1.21605 0.97593 0.98534 0.98184 1.20485 0.95069 0.99332 0.97172 1.21528 0.98569 1.04694 0.91742 0.89489 0.92157 0.97378 0.97111 0.92432 0.92042 0.92157 0.92586 0.92543 0.91713 0.92397 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.79 13.65 55.43 0.76 -28.03 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.59 -17.45 9.08 -34.44 -0.31 -17.76 16 8 H 0.05 1.41 7.68 -52.49 -0.40 1.01 16 9 C 0.03 0.88 4.57 -27.89 -0.13 0.75 16 10 C -0.10 -2.26 4.84 -90.64 -0.44 -2.70 16 11 H 0.09 2.05 7.17 -51.93 -0.37 1.67 16 12 C -0.17 -3.07 5.97 -90.79 -0.54 -3.61 16 13 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 14 C -0.09 -1.28 5.83 -26.94 -0.16 -1.44 16 15 C -0.12 -1.53 5.92 -26.64 -0.16 -1.69 16 16 C -0.12 -1.71 5.70 -26.64 -0.15 -1.86 16 17 C -0.08 -1.30 5.91 -28.14 -0.17 -1.47 16 18 C -0.15 -2.76 5.51 -92.68 -0.51 -3.27 16 19 H 0.09 1.70 7.95 -51.92 -0.41 1.29 16 20 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 21 H 0.01 0.22 7.68 -51.93 -0.40 -0.18 16 22 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 25 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.98 7.15 -51.93 -0.37 0.61 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 241.48 15.07 3.64 3.64 Total: -1.00 -30.74 241.48 -8.19 -38.93 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.84 Total: -2.62 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -2.66 Total: -32.80 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.76 Total: -28.03 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.74 -8.19 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.496 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds