Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 H 1.09003 * 115.57259 * 330.58471 * 10 9 7 12 12 C 1.53652 * 117.54092 * 184.73262 * 10 9 7 13 13 H 1.08996 * 117.18754 * 359.87243 * 12 10 9 14 14 C 1.52712 * 116.02986 * 141.80409 * 12 10 9 15 15 C 1.52873 * 110.15300 * 90.20524 * 14 12 10 16 16 C 1.53303 * 108.57979 * 305.48099 * 15 14 12 17 17 C 1.52870 * 108.59439 * 74.44300 * 16 15 14 18 18 C 1.50314 * 110.12049 * 304.91349 * 17 16 15 19 19 H 1.09011 * 112.91953 * 166.34858 * 18 17 16 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.08999 * 109.35389 * 210.41526 * 14 12 10 24 24 H 1.09004 * 109.35873 * 330.13572 * 14 12 10 25 25 H 1.09002 * 109.61787 * 65.20403 * 15 14 12 26 26 H 1.08995 * 109.62502 * 185.56748 * 15 14 12 27 27 H 1.09005 * 109.61605 * 194.17374 * 16 15 14 28 28 H 1.09003 * 109.61542 * 314.52809 * 16 15 14 29 29 H 1.08994 * 109.26896 * 65.37495 * 17 16 15 30 30 H 1.09005 * 109.26705 * 184.88079 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 3.2017 -3.4633 -0.4823 12 6 1.6749 -5.0844 -0.1099 13 1 0.5917 -5.1824 -0.1803 14 6 2.4778 -6.0635 -0.9636 15 6 3.5036 -6.7972 -0.0995 16 6 4.3616 -5.7568 0.6295 17 6 3.5315 -5.1446 1.7579 18 6 2.2470 -4.5874 1.2111 19 1 1.5196 -4.3555 1.9892 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 1.8007 -6.7887 -1.4148 24 1 2.9968 -5.5157 -1.7501 25 1 2.9878 -7.4220 0.6297 26 1 4.1367 -7.4194 -0.7319 27 1 5.2461 -6.2389 1.0460 28 1 4.6646 -4.9775 -0.0698 29 1 3.3111 -5.9123 2.4995 30 1 4.1003 -4.3426 2.2285 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -32.397924 kcal Electronic energy + Delta-G solvation = -10765.104035 eV Core-core repulsion = 8944.624768 eV Total energy + Delta-G solvation = -1820.479267 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.62900 -35.91075 -34.05547 -31.72351 -29.82621 -25.81495 -24.11031 -23.41826 -21.28677 -19.28676 -18.90460 -16.77285 -15.72898 -15.60612 -15.08289 -14.92307 -14.37042 -14.04277 -13.84268 -13.21869 -13.15799 -12.76059 -12.53135 -12.06672 -11.94843 -11.74392 -11.54303 -11.13384 -10.99916 -10.67264 -10.32364 -10.15267 -8.72025 -6.42027 1.49444 1.59551 1.77566 2.54025 2.83331 3.13643 3.66625 3.88971 3.92687 4.11624 4.23368 4.37682 4.44489 4.64051 4.70858 4.74671 4.83400 5.04377 5.06007 5.07594 5.21817 5.25101 5.32880 5.36923 5.45285 5.51693 5.55073 5.98289 6.14143 6.54695 7.39596 8.67890 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.067568 B = 0.009805 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.300013 B = 2854.956055 C = 3013.817259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.122 2.878 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.611 4.611 8 H 0.049 0.951 9 C 0.037 3.963 10 C -0.136 4.136 11 H 0.087 0.913 12 C -0.147 4.147 13 H 0.086 0.914 14 C -0.086 4.086 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.084 4.084 18 C -0.136 4.136 19 H 0.071 0.929 20 H 0.253 0.747 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -11.955 0.853 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.943 3.057 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.649 4.649 8 H 0.067 0.933 9 C 0.001 3.999 10 C -0.154 4.154 11 H 0.105 0.895 12 C -0.165 4.165 13 H 0.104 0.896 14 C -0.123 4.123 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.121 4.121 18 C -0.154 4.154 19 H 0.090 0.910 20 H 0.063 0.937 21 H 0.003 0.997 22 H 0.004 0.996 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.922 -10.338 0.856 13.052 hybrid contribution -0.487 -1.330 0.012 1.416 sum 7.435 -11.668 0.868 13.862 Atomic orbital electron populations 1.70895 1.07949 1.29697 1.49074 1.27554 0.96645 1.07030 0.92709 0.82887 0.74149 0.70768 0.77943 1.19569 1.19346 1.20586 1.22469 0.94531 0.93188 1.54683 0.93299 1.18749 0.93990 0.93797 0.93402 1.22387 0.99782 0.90268 1.02989 0.89528 1.22481 0.98699 0.95897 0.99466 0.89593 1.21061 0.97578 0.96784 0.96871 1.21537 0.97054 0.97197 0.98977 1.21622 0.98477 0.98439 0.97308 1.20548 0.93361 0.99866 0.98316 1.21614 1.00062 1.02787 0.90960 0.91047 0.93734 0.99692 0.99639 0.90358 0.92566 0.91095 0.89974 0.89757 0.93429 0.89876 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.57 13.65 21.45 0.29 -60.28 16 2 C -0.04 -2.59 5.46 84.65 0.46 -2.13 16 3 Si 1.12 52.01 29.90 68.60 2.05 54.06 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.61 -36.88 9.08 25.60 0.23 -36.64 16 8 H 0.05 2.88 7.68 -2.91 -0.02 2.86 16 9 C 0.04 2.10 4.57 29.85 0.14 2.23 16 10 C -0.14 -6.08 4.84 -10.80 -0.05 -6.13 16 11 H 0.09 3.93 7.17 -2.39 -0.02 3.92 16 12 C -0.15 -5.28 5.97 -10.90 -0.07 -5.34 16 13 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 14 C -0.09 -2.37 5.83 30.46 0.18 -2.19 16 15 C -0.11 -2.48 5.92 30.65 0.18 -2.30 16 16 C -0.12 -3.02 5.70 30.65 0.17 -2.84 16 17 C -0.08 -2.43 5.91 29.68 0.18 -2.26 16 18 C -0.14 -5.05 5.51 -12.13 -0.07 -5.11 16 19 H 0.07 2.84 7.95 -2.38 -0.02 2.82 16 20 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 21 H -0.02 -0.90 7.68 -2.39 -0.02 -0.92 16 22 H -0.01 -0.87 8.01 -2.39 -0.02 -0.89 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.64 8.06 -2.38 -0.02 1.62 16 25 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.05 1.35 7.15 -2.39 -0.02 1.33 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -67.65 241.48 4.88 -62.76 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.18 Total: 6.18 kcal Atomic # 6 Polarization: -64.08 SS G_CDS: 1.36 Total: -62.72 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.29 Total: -60.28 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -67.65 4.88 -62.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.365 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds