Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48501 * 109.47370 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47537 * 239.99824 * 3 2 1 6 6 H 1.48508 * 109.47023 * 120.00098 * 3 2 1 7 7 C 1.40210 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00432 * 4.01479 * 7 2 1 9 9 C 1.41264 * 120.00152 * 184.01440 * 7 2 1 10 10 N 1.30637 * 123.21913 * 5.98339 * 9 7 2 11 11 C 1.47577 * 108.33933 * 180.50976 * 10 9 7 12 12 C 1.54788 * 102.05195 * 15.33911 * 11 10 9 13 13 H 1.09004 * 111.01671 * 94.19254 * 12 11 10 14 14 C 1.53003 * 111.05006 * 218.05901 * 12 11 10 15 15 C 1.53009 * 117.49862 * 242.34094 * 14 12 11 16 16 C 1.52999 * 117.49643 * 173.68488 * 14 12 11 17 17 O 1.35191 * 123.22941 * 186.27685 * 9 7 2 18 18 H 0.96998 * 119.99376 * 174.85122 * 1 2 3 19 19 H 1.08992 * 111.10464 * 257.07828 * 11 10 9 20 20 H 1.09002 * 110.78937 * 133.45232 * 11 10 9 21 21 H 1.09002 * 115.55053 * 28.01465 * 14 12 11 22 22 H 1.08991 * 117.49797 * 0.02562 * 15 14 12 23 23 H 1.09003 * 117.49295 * 145.02175 * 15 14 12 24 24 H 1.09013 * 117.49568 * 214.97799 * 16 14 12 25 25 H 1.08992 * 117.50191 * 359.97389 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 1.2750 2.7465 0.0006 5 1 3.0938 1.6965 -1.2124 6 1 3.0938 1.6964 1.2126 7 6 2.0071 -1.2142 -0.0005 8 1 1.4692 -2.1484 -0.0664 9 6 3.4172 -1.2158 0.0851 10 7 4.1235 -0.1344 0.2807 11 6 5.5507 -0.5095 0.3021 12 6 5.5207 -1.9299 -0.3122 13 1 5.7055 -1.8955 -1.3859 14 6 6.5238 -2.8513 0.3849 15 6 7.6613 -3.4265 -0.4615 16 6 6.5135 -4.3307 -0.0052 17 8 4.1653 -2.3356 -0.0332 18 1 -0.4849 -0.8367 -0.0754 19 1 5.9346 -0.5347 1.3218 20 1 6.1383 0.1692 -0.3162 21 1 6.7438 -2.6064 1.4240 22 1 7.6953 -3.1482 -1.5147 23 1 8.6296 -3.5603 0.0210 24 1 6.7272 -5.0591 0.7772 25 1 5.7920 -4.6477 -0.7581 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -9.256636 kcal Electronic energy + Delta-G solvation = -10723.492435 eV Core-core repulsion = 8702.757645 eV Total energy + Delta-G solvation = -2020.734791 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.79218 -36.68510 -33.67164 -31.88059 -29.62365 -25.65707 -22.48661 -22.15592 -20.71194 -19.72886 -17.67775 -16.04198 -15.44751 -14.89901 -13.97818 -13.29475 -13.14979 -12.90472 -12.06084 -11.50823 -11.44548 -11.20291 -11.10127 -10.58489 -10.29191 -10.17095 -9.84832 -9.53042 -9.00112 -7.90023 -7.77323 -7.26800 -4.95048 3.38841 3.69278 3.79616 4.07378 4.13722 4.54853 4.58516 4.85482 5.02923 5.17566 5.30148 5.58789 5.62744 5.69983 5.87174 5.98975 6.20583 6.31152 6.34046 6.60847 6.66511 7.39703 7.58255 8.06404 8.36835 8.67767 9.54303 10.13805 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.079324 B = 0.012601 C = 0.011155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.897670 B = 2221.429606 C = 2509.543317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.064 3.936 3 Si 1.140 2.860 4 H -0.328 1.328 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.391 3.609 10 N -0.701 5.701 11 C 0.035 3.965 12 C 0.077 3.923 13 H 0.073 0.927 14 C -0.145 4.145 15 C -0.174 4.174 16 C -0.169 4.169 17 O -0.355 6.355 18 H 0.282 0.718 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.107 0.893 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 -4.096 -0.793 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.157 4.157 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.538 4.538 8 H 0.100 0.900 9 C 0.196 3.804 10 N -0.455 5.455 11 C -0.095 4.095 12 C 0.019 3.981 13 H 0.090 0.910 14 C -0.164 4.164 15 C -0.211 4.211 16 C -0.206 4.206 17 O -0.263 6.263 18 H 0.093 0.907 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.125 0.875 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.046 -1.967 -0.578 10.253 hybrid contribution 0.557 -2.660 -0.174 2.724 sum 10.604 -4.628 -0.751 11.594 Atomic orbital electron populations 1.70621 1.07733 1.32529 1.32897 1.27491 0.95135 1.05083 0.88031 0.82162 0.70813 0.69540 0.80243 1.26038 1.21650 1.19435 1.19906 0.87004 0.97008 1.49927 0.90040 1.22111 0.93194 0.79431 0.85615 1.74175 0.99380 1.23622 1.48311 1.23371 0.95515 0.91913 0.98730 1.23313 0.81612 0.95113 0.98061 0.90964 1.22296 0.98857 0.95529 0.99711 1.22964 0.93473 1.04557 1.00151 1.22847 1.01054 0.93028 1.03715 1.86955 1.18514 1.34297 1.86489 0.90666 0.92930 0.91876 0.87467 0.88800 0.88658 0.88927 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.98 13.64 55.56 0.76 -22.23 15 2 C 0.06 1.81 5.52 -17.33 -0.10 1.72 15 3 Si 1.14 29.44 25.79 -169.99 -4.38 25.06 15 4 H -0.33 -8.22 7.11 56.52 0.40 -7.82 15 5 H -0.29 -7.49 7.11 56.52 0.40 -7.08 15 6 H -0.27 -7.03 6.72 56.52 0.38 -6.65 15 7 C -0.50 -14.50 9.94 -37.69 -0.37 -14.87 15 8 H 0.08 2.37 8.05 -52.49 -0.42 1.95 15 9 C 0.39 10.84 7.23 -16.91 -0.12 10.72 15 10 N -0.70 -18.83 6.59 -59.54 -0.39 -19.23 15 11 C 0.03 0.76 7.68 -2.51 -0.02 0.74 15 12 C 0.08 1.58 3.90 -25.79 -0.10 1.48 15 13 H 0.07 1.41 7.97 -51.93 -0.41 1.00 15 14 C -0.15 -2.37 5.54 -90.61 -0.50 -2.87 15 15 C -0.17 -2.22 10.20 -26.69 -0.27 -2.49 15 16 C -0.17 -2.42 10.22 -26.69 -0.27 -2.69 15 17 O -0.35 -8.95 10.88 -17.27 -0.19 -9.14 15 18 H 0.28 7.63 8.72 -40.82 -0.36 7.27 15 19 H 0.05 1.09 7.70 -51.93 -0.40 0.69 15 20 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 21 H 0.11 1.69 7.83 -51.93 -0.41 1.29 15 22 H 0.09 1.14 8.08 -51.93 -0.42 0.72 15 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.09 1.16 8.14 -51.92 -0.42 0.74 15 25 H 0.10 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 218.99 15.07 3.30 3.30 Total: -1.00 -30.34 218.99 -5.59 -35.94 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: -2.93 Total: -5.44 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.76 Total: -8.27 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.37 Total: -41.45 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.19 Total: -9.14 kcal Atomic # 14 Polarization: 29.44 SS G_CDS: -4.38 Total: 25.06 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.34 -5.59 -35.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.681 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds