Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38024 * 125.74429 * 2 1 4 4 C 1.39943 * 126.35714 * 359.97438 * 3 2 1 5 5 H 1.08006 * 119.99991 * 0.28036 * 4 3 2 6 6 C 1.40069 * 120.00307 * 180.28434 * 4 3 2 7 7 N 1.30864 * 119.99783 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00107 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47255 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47232 * 119.99451 * 8 6 4 11 11 H 1.48499 * 109.47269 * 239.99732 * 8 6 4 12 12 C 1.39744 * 107.28869 * 180.26014 * 3 2 1 13 13 C 1.39305 * 107.05585 * 359.73887 * 12 3 2 14 14 C 1.35970 * 108.08733 * 0.02562 * 13 12 3 15 15 C 1.50699 * 125.47437 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.47152 * 0.02562 * 15 14 13 17 17 H 1.09002 * 109.46819 * 270.19124 * 1 2 3 18 18 H 1.09001 * 109.47450 * 30.18916 * 1 2 3 19 19 H 1.08993 * 109.47337 * 150.19691 * 1 2 3 20 20 H 0.96996 * 119.99871 * 180.02562 * 7 6 4 21 21 H 1.07997 * 126.47535 * 179.77945 * 12 3 2 22 22 H 1.07998 * 125.95647 * 179.97438 * 13 12 3 23 23 H 1.08997 * 109.47198 * 240.02042 * 15 14 13 24 24 H 1.09008 * 109.47393 * 120.01759 * 15 14 13 25 25 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.1202 0.0000 4 6 1.8412 2.4519 -0.0005 5 1 0.7851 2.6784 0.0036 6 6 2.7802 3.4912 -0.0065 7 7 4.0597 3.2169 -0.0110 8 14 2.2060 5.2688 -0.0079 9 1 0.7216 5.3095 -0.0026 10 1 2.7248 5.9575 1.2012 11 1 2.7152 5.9525 -1.2238 12 6 3.5968 0.6779 -0.0061 13 6 3.5628 -0.7148 -0.0036 14 6 2.2604 -1.1052 0.0032 15 6 1.7751 -2.5319 0.0073 16 8 2.8972 -3.4168 0.0036 17 1 -0.3633 0.0034 1.0277 18 1 -0.3634 0.8883 -0.5168 19 1 -0.3633 -0.8917 -0.5107 20 1 4.7100 3.9366 -0.0148 21 1 4.4807 1.2984 -0.0110 22 1 4.4213 -1.3701 -0.0073 23 1 1.1677 -2.7116 -0.8797 24 1 1.1756 -2.7093 0.9003 25 1 2.6591 -4.3540 0.0056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032187.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = -32.747769 kcal Electronic energy + Delta-G solvation = -10668.611101 eV Core-core repulsion = 8646.857658 eV Total energy + Delta-G solvation = -2021.753443 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.12399 -37.53951 -35.40708 -33.04875 -30.98223 -28.24480 -26.75229 -24.54498 -21.31621 -19.73168 -18.74423 -18.07555 -17.11869 -16.17931 -15.99193 -14.97045 -14.73777 -14.19010 -14.09828 -13.35944 -13.08622 -12.94897 -12.64111 -12.59997 -12.07697 -11.66274 -11.51277 -11.26984 -10.93142 -8.96041 -8.64192 -8.37410 -6.11662 1.32720 1.41499 1.57909 1.88126 2.23307 2.61710 2.62240 3.47623 3.71836 4.23678 4.30193 4.53338 4.55784 4.69821 4.72301 5.08597 5.27378 5.44418 5.86808 6.04487 6.24535 6.45243 6.89604 7.06619 7.08138 7.31463 7.47437 8.54561 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.077188 B = 0.011952 C = 0.010429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.662799 B = 2342.060349 C = 2684.274304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.486 5.486 3 C 0.184 3.816 4 C -0.482 4.482 5 H 0.079 0.921 6 C 0.020 3.980 7 N -0.838 5.838 8 Si 1.002 2.998 9 H -0.254 1.254 10 H -0.269 1.269 11 H -0.269 1.269 12 C -0.338 4.338 13 C -0.183 4.183 14 C -0.109 4.109 15 C 0.181 3.819 16 O -0.582 6.582 17 H 0.064 0.936 18 H 0.072 0.928 19 H 0.092 0.908 20 H 0.279 0.721 21 H 0.130 0.870 22 H 0.103 0.897 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -4.740 -0.072 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.172 5.172 3 C 0.074 3.926 4 C -0.517 4.517 5 H 0.097 0.903 6 C -0.192 4.192 7 N -0.467 5.467 8 Si 0.823 3.177 9 H -0.177 1.177 10 H -0.194 1.194 11 H -0.194 1.194 12 C -0.361 4.361 13 C -0.209 4.209 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.389 6.389 17 H 0.083 0.917 18 H 0.091 0.909 19 H 0.111 0.889 20 H 0.090 0.910 21 H 0.147 0.853 22 H 0.121 0.879 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.260 -4.172 -0.078 8.374 hybrid contribution -0.019 0.203 0.020 0.205 sum -7.279 -3.969 -0.058 8.291 Atomic orbital electron populations 1.21815 0.77393 1.03800 1.02465 1.43887 1.05684 1.04687 1.62899 1.18442 0.88932 0.86600 0.98608 1.18813 0.94745 0.89034 1.49086 0.90306 1.26758 0.94208 1.05895 0.92337 1.69941 1.02898 1.35208 1.38654 0.84861 0.79463 0.74853 0.78539 1.17733 1.19373 1.19364 1.21833 0.97101 0.93399 1.23745 1.20407 0.95221 0.95045 1.10179 1.19878 0.90522 0.88801 1.22247 1.19842 0.86586 0.83781 0.99559 1.86455 1.33851 1.20877 1.97746 0.91742 0.90877 0.88895 0.91017 0.85296 0.87852 0.92396 0.92502 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.68 127.77 1.36 4.48 15 2 N -0.49 -24.05 3.19 -523.59 -1.67 -25.72 15 3 C 0.18 10.79 6.69 38.95 0.26 11.06 15 4 C -0.48 -27.16 8.98 23.13 0.21 -26.95 15 5 H 0.08 4.08 7.15 -2.91 -0.02 4.06 15 6 C 0.02 1.07 5.50 85.28 0.47 1.54 15 7 N -0.84 -47.93 10.26 21.86 0.22 -47.71 15 8 Si 1.00 40.18 29.56 68.60 2.03 42.21 15 9 H -0.25 -9.59 7.11 99.48 0.71 -8.88 15 10 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 12 C -0.34 -20.90 9.80 22.89 0.22 -20.68 15 13 C -0.18 -10.24 10.10 22.00 0.22 -10.02 15 14 C -0.11 -5.31 6.88 41.36 0.28 -5.02 15 15 C 0.18 6.29 6.95 71.24 0.49 6.78 15 16 O -0.58 -19.35 12.90 -148.98 -1.92 -21.27 15 17 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 18 H 0.07 2.60 7.35 -2.39 -0.02 2.58 15 19 H 0.09 2.63 7.75 -2.39 -0.02 2.61 15 20 H 0.28 14.42 8.30 -92.71 -0.77 13.65 15 21 H 0.13 8.46 5.70 -2.91 -0.02 8.44 15 22 H 0.10 5.58 7.81 -2.91 -0.02 5.56 15 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.06 1.72 8.14 -2.38 -0.02 1.70 15 25 H 0.40 7.65 9.12 -74.06 -0.68 6.98 15 Total: -1.00 -72.89 220.40 2.71 -70.18 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.52 Total: 21.13 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.53 Total: -38.81 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.45 Total: -73.43 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.92 Total: -21.27 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -72.89 2.71 -70.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032187.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.428 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds