Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35466 * 117.00119 * 2 1 4 4 N 1.32799 * 119.49059 * 359.97438 * 3 2 1 5 5 N 1.28647 * 121.78388 * 180.02562 * 4 3 2 6 6 C 1.32013 * 120.64358 * 359.70462 * 5 4 3 7 7 C 1.40989 * 118.94936 * 0.56191 * 6 5 4 8 8 C 1.41497 * 120.81543 * 179.71619 * 7 6 5 9 9 H 1.07992 * 120.00101 * 5.87690 * 8 7 6 10 10 C 1.40137 * 119.99631 * 185.59757 * 8 7 6 11 11 N 1.30650 * 120.00347 * 354.07903 * 10 8 7 12 12 Si 1.86807 * 119.99521 * 174.07441 * 10 8 7 13 13 H 1.48499 * 109.46875 * 94.98852 * 12 10 8 14 14 H 1.48500 * 109.46978 * 214.98433 * 12 10 8 15 15 H 1.48499 * 109.47154 * 334.98867 * 12 10 8 16 16 N 1.32133 * 119.49559 * 179.97438 * 3 2 1 17 17 H 1.08997 * 109.46993 * 299.99498 * 1 2 3 18 18 H 1.09000 * 109.47303 * 59.99535 * 1 2 3 19 19 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 20 20 H 1.07994 * 120.52938 * 180.30482 * 6 5 4 21 21 H 0.97004 * 120.00387 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3109 2.3143 -0.0005 5 7 1.8486 3.4830 -0.0010 6 6 3.1617 3.6195 0.0048 7 6 3.9681 2.4630 -0.0005 8 6 5.3795 2.5635 -0.0006 9 1 5.8521 3.5293 0.0992 10 6 6.1640 1.4089 -0.1242 11 7 5.5982 0.2313 -0.1230 12 14 8.0190 1.5537 -0.2909 13 1 8.6488 1.4102 1.0462 14 1 8.5200 0.4844 -1.1914 15 1 8.3627 2.8816 -0.8600 16 7 3.3641 1.2645 0.0005 17 1 -0.3633 0.5137 0.8900 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 3.6111 4.6015 0.0093 21 1 6.1412 -0.5679 -0.2090 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043035.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = 1.237164 kcal Electronic energy + Delta-G solvation = -10460.471118 eV Core-core repulsion = 8336.651029 eV Total energy + Delta-G solvation = -2123.820089 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.63741 -39.17156 -36.38458 -34.16288 -32.48362 -29.05775 -28.11452 -25.32649 -24.01287 -20.25416 -19.02958 -18.33571 -17.11331 -16.88651 -16.41159 -15.39214 -15.01377 -14.96705 -13.57887 -13.18631 -12.98621 -12.73073 -12.49048 -12.18651 -11.90953 -11.83912 -11.79837 -10.81790 -10.04708 -9.46070 -8.51563 -7.09012 0.54723 0.72802 1.43971 1.56011 1.63842 2.06739 2.16273 2.66103 3.56969 3.70032 4.09630 4.41626 4.42137 4.52286 4.70329 4.90025 4.96611 5.19401 5.88233 6.00927 6.40014 6.48575 7.31966 8.13821 8.38465 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.064692 B = 0.013764 C = 0.011427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.713342 B = 2033.806052 C = 2449.667192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.320 6.320 3 C 0.422 3.578 4 N -0.482 5.482 5 N -0.213 5.213 6 C -0.100 4.100 7 C 0.197 3.803 8 C -0.378 4.378 9 H 0.133 0.867 10 C 0.010 3.990 11 N -0.723 5.723 12 Si 1.009 2.991 13 H -0.258 1.258 14 H -0.270 1.270 15 H -0.239 1.239 16 N -0.551 5.551 17 H 0.052 0.948 18 H 0.052 0.948 19 H 0.132 0.868 20 H 0.187 0.813 21 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 0.208 -0.304 2.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.221 6.221 3 C 0.115 3.885 4 N -0.348 5.348 5 N -0.052 5.052 6 C -0.287 4.287 7 C 0.067 3.933 8 C -0.414 4.414 9 H 0.151 0.849 10 C -0.216 4.216 11 N -0.343 5.343 12 Si 0.826 3.174 13 H -0.182 1.182 14 H -0.195 1.195 15 H -0.162 1.162 16 N -0.291 5.291 17 H 0.071 0.929 18 H 0.070 0.930 19 H 0.150 0.850 20 H 0.204 0.796 21 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.722 -0.549 -0.315 1.835 hybrid contribution 0.981 -0.053 -0.039 0.984 sum 2.704 -0.602 -0.353 2.792 Atomic orbital electron populations 1.23054 0.75318 1.04533 1.01953 1.85946 1.24265 1.23705 1.88215 1.22625 0.89631 0.86351 0.89917 1.73155 1.31742 0.94799 1.35073 1.72652 1.11953 1.15095 1.05459 1.24950 0.92341 1.01410 1.09984 1.19893 0.96294 0.86407 0.90673 1.20622 0.88389 0.97264 1.35079 0.84907 1.27521 1.07842 0.93709 0.92564 1.70195 1.40730 1.00170 1.23231 0.84784 0.72502 0.80504 0.79586 1.18236 1.19468 1.16173 1.69342 1.04839 1.27636 1.27252 0.92925 0.92955 0.84985 0.79604 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.70 10.37 113.37 1.18 2.87 14 2 O -0.32 -16.00 10.56 -87.65 -0.93 -16.93 14 3 C 0.42 23.77 8.56 180.48 1.54 25.31 14 4 N -0.48 -26.27 10.38 -174.38 -1.81 -28.08 14 5 N -0.21 -11.24 11.60 -55.65 -0.65 -11.88 14 6 C -0.10 -4.94 11.14 85.34 0.95 -3.99 14 7 C 0.20 10.66 6.57 40.26 0.26 10.93 14 8 C -0.38 -18.08 9.20 23.53 0.22 -17.87 14 9 H 0.13 5.33 7.86 -2.91 -0.02 5.31 14 10 C 0.01 0.47 5.49 85.33 0.47 0.94 14 11 N -0.72 -36.89 11.56 21.85 0.25 -36.64 14 12 Si 1.01 32.50 29.56 68.60 2.03 34.53 14 13 H -0.26 -8.00 7.11 99.48 0.71 -7.30 14 14 H -0.27 -8.58 7.11 99.48 0.71 -7.87 14 15 H -0.24 -7.04 7.11 99.48 0.71 -6.34 14 16 N -0.55 -32.61 8.22 -306.56 -2.52 -35.13 14 17 H 0.05 1.88 8.10 -2.39 -0.02 1.87 14 18 H 0.05 1.88 8.10 -2.39 -0.02 1.86 14 19 H 0.13 3.50 8.14 -2.39 -0.02 3.48 14 20 H 0.19 7.48 8.06 -2.91 -0.02 7.45 14 21 H 0.29 13.25 8.29 -92.71 -0.77 12.49 14 Total: -1.00 -67.24 203.07 2.25 -65.00 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.25 Total: 10.95 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 4.62 Total: 18.19 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.72 Total: -111.73 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.93 Total: -16.93 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Total: -67.24 2.25 -65.00 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043035.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.233 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds