Wall clock time and date at job start Mon Mar 30 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00377 * 2 1 4 4 C 1.50695 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.35976 * 125.47429 * 0.02562 * 4 3 2 6 6 C 1.39304 * 108.08992 * 179.97438 * 5 4 3 7 7 C 1.39740 * 107.05538 * 359.77954 * 6 5 4 8 8 C 1.39942 * 126.35438 * 180.24741 * 7 6 5 9 9 H 1.08002 * 119.99890 * 180.12555 * 8 7 6 10 10 C 1.40066 * 120.00534 * 0.13018 * 8 7 6 11 11 N 1.30868 * 119.99500 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00366 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47291 * 89.99884 * 12 10 8 14 14 H 1.48505 * 109.47165 * 209.99397 * 12 10 8 15 15 H 1.48497 * 109.47227 * 329.99432 * 12 10 8 16 16 N 1.36172 * 125.47625 * 179.97438 * 4 3 2 17 17 H 0.97001 * 125.73980 * 359.95841 * 16 4 3 18 18 H 1.09005 * 109.46637 * 300.00213 * 1 2 3 19 19 H 1.08998 * 109.47101 * 60.00013 * 1 2 3 20 20 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47105 * 59.99855 * 3 2 1 22 22 H 1.09007 * 109.46876 * 300.00436 * 3 2 1 23 23 H 1.07996 * 125.95383 * 0.02562 * 5 4 3 24 24 H 1.08003 * 126.46844 * 180.02562 * 6 5 4 25 25 H 0.96998 * 119.99740 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5125 1.1863 -0.0006 5 6 4.2117 0.0201 -0.0016 6 6 5.5698 0.3300 -0.0025 7 6 5.6722 1.7237 -0.0072 8 6 6.8570 2.4684 -0.0144 9 1 6.8164 3.5477 -0.0155 10 6 8.0955 1.8143 -0.0204 11 7 8.1447 0.5065 -0.0187 12 14 9.6769 2.8084 -0.0308 13 1 10.1038 3.0740 1.3665 14 1 10.7374 2.0442 -0.7356 15 1 9.4468 4.0972 -0.7316 16 7 4.3879 2.2294 -0.0013 17 1 4.1491 3.1695 -0.0020 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.6887 1.8463 0.8900 22 1 1.6886 1.8463 -0.8900 23 1 3.7880 -0.9732 -0.0025 24 1 6.3889 -0.3739 -0.0038 25 1 9.0023 0.0535 -0.0225 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074943.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:18 Heat of formation + Delta-G solvation = -11.106265 kcal Electronic energy + Delta-G solvation = -10408.467798 eV Core-core repulsion = 8387.652802 eV Total energy + Delta-G solvation = -2020.814996 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.01050 -37.12334 -33.39609 -29.59361 -28.98879 -27.12149 -25.39366 -22.69780 -19.12229 -18.68640 -17.27857 -15.77793 -15.41710 -15.23405 -14.72368 -13.58882 -12.83481 -12.42733 -11.71094 -11.70349 -11.52789 -11.41567 -11.10779 -10.98500 -10.39243 -9.80461 -9.49168 -9.41360 -9.13862 -7.09695 -6.60283 -6.39812 -4.04207 3.05182 3.15904 3.19358 3.82864 3.98350 4.14285 4.68725 5.21829 5.48080 5.50702 5.59981 5.76232 5.81430 6.08621 6.24359 7.11717 7.29883 7.32714 7.66546 7.92955 8.09632 8.36549 8.52455 9.00216 9.17595 9.34477 9.56867 10.49207 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.130582 B = 0.009039 C = 0.008507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 214.373508 B = 3096.831496 C = 3290.745200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.162 3.838 4 C -0.129 4.129 5 C -0.141 4.141 6 C -0.294 4.294 7 C 0.216 3.784 8 C -0.456 4.456 9 H 0.067 0.933 10 C 0.072 3.928 11 N -0.801 5.801 12 Si 0.921 3.079 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.267 1.267 16 N -0.592 5.592 17 H 0.388 0.612 18 H 0.035 0.965 19 H 0.035 0.965 20 H 0.082 0.918 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.104 0.896 24 H 0.154 0.846 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 2.050 0.004 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C 0.085 3.915 4 C -0.234 4.234 5 C -0.167 4.167 6 C -0.317 4.317 7 C 0.106 3.894 8 C -0.492 4.492 9 H 0.085 0.915 10 C -0.144 4.144 11 N -0.429 5.429 12 Si 0.746 3.254 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.191 1.191 16 N -0.196 5.196 17 H 0.221 0.779 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.100 0.900 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.122 0.878 24 H 0.171 0.829 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.620 1.754 0.001 6.849 hybrid contribution 0.302 1.127 -0.001 1.167 sum -6.318 2.881 0.000 6.944 Atomic orbital electron populations 1.22677 0.82150 1.02202 0.99368 1.87902 1.18296 1.28036 1.95204 1.20165 0.90343 0.83421 0.97597 1.18935 0.88590 0.88879 1.27031 1.20316 0.94516 0.94829 1.07037 1.21845 0.94640 0.94423 1.20825 1.18139 0.81476 0.92603 0.97223 1.18400 0.89059 0.93544 1.48158 0.91481 1.25606 1.00350 0.94959 0.93471 1.69791 1.26545 1.08378 1.38193 0.86127 0.80508 0.79954 0.78817 1.19783 1.20343 1.19116 1.41646 1.06060 1.05662 1.66185 0.77947 0.94608 0.94600 0.89970 0.94879 0.94886 0.87834 0.82917 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 15 2 O -0.38 -7.18 9.94 -35.23 -0.35 -7.53 15 3 C 0.16 3.15 6.56 36.00 0.24 3.39 15 4 C -0.13 -3.15 7.13 -81.48 -0.58 -3.73 15 5 C -0.14 -3.77 10.10 -40.00 -0.40 -4.17 15 6 C -0.29 -8.58 9.80 -38.62 -0.38 -8.96 15 7 C 0.22 6.12 6.89 -83.88 -0.58 5.54 15 8 C -0.46 -12.60 9.45 -38.26 -0.36 -12.96 15 9 H 0.07 1.73 7.85 -52.49 -0.41 1.32 15 10 C 0.07 1.90 5.50 -17.28 -0.09 1.80 15 11 N -0.80 -21.95 10.26 55.56 0.57 -21.38 15 12 Si 0.92 19.57 29.56 -169.99 -5.03 14.55 15 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 16 N -0.59 -14.59 6.15 -6.67 -0.04 -14.64 15 17 H 0.39 8.14 8.96 -40.82 -0.37 7.78 15 18 H 0.04 0.42 8.14 -51.93 -0.42 0.00 15 19 H 0.04 0.42 8.14 -51.93 -0.42 0.00 15 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.03 0.59 8.14 -51.92 -0.42 0.17 15 23 H 0.10 2.63 7.81 -52.49 -0.41 2.22 15 24 H 0.15 4.62 5.70 -52.48 -0.30 4.32 15 25 H 0.27 6.81 8.30 -40.82 -0.34 6.47 15 LS Contribution 223.01 15.07 3.36 3.36 Total: -1.00 -30.81 223.01 -5.27 -36.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.73 Total: 7.11 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.05 Total: -17.55 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.53 Total: -36.01 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.35 Total: -7.53 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.81 -5.27 -36.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074943.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.969 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds